Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 127 3e-24 seq11 95.1 1e-14 seq4 89.7 6e-13 >seq6 Length=67274854 Score = 127 bits (140), Expect = 3e-24 Identities = 874/1386 (63%), Gaps = 34/1386 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | |||| |||||||||| ||| ||||| ||||| Sbjct 22087247 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGAC 22087306 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 ||||||||||| || || | || ||||| || | | || | || || || Sbjct 22087307 GCTGTGGGCATCGGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCT 22087366 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTG---CCACATATCAAACTG 118357 || || ||| ||| |||| | || | ||| | || |||||| || | || Sbjct 22087367 TTCAGCAGCTTCC-AGTCCCAC---AGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTG 22087422 Query 118358 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 118417 ||||| || | | | || || || || | ||||| || || || | | || Sbjct 22087423 CAGGATGCCCTTGCTGACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGC 22087482 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 | ||| |||||||||| || || |||| || || || |||||||| | || | Sbjct 22087483 TAGCTCGCAGCTCGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAG 22087542 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGAC 118536 || ||||| | || || | || ||| || || || |||| || | || Sbjct 22087543 CAACTGAGCCTCTGGGCTTTCGAAGG-GATAACGCATCAGGATGAAGGCATCTGCCAAAC 22087601 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGG 118596 |||| || || | || ||||| | || | | | || |||||| ||| || | Sbjct 22087602 CTTGAACTCCAATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTG 22087661 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 | || | || | || || ||| | || || |||||| | ||| || || | || Sbjct 22087662 GGTAGTAGTTGATTTCAATGACCTTGTTGAGGTTTTTGACAATAACTTTGGTCACAG-AT 22087720 Query 118657 GA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 | ||||| | | | |||||| | || ||| |||| ||| | || || || Sbjct 22087721 GCCAGCTTCTTGAAGTCAAAAGTCCGT---TCTGGTGTGACGTACATGTTGAGAGCAATG 22087777 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || || || |||||||| | ||| || || |||||||| | || ||| |||||| Sbjct 22087778 GAGGCAAGGTTACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCAC 22087837 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 | ||| | || |||||||||| |||| || || ||| ||||||| ||||| Sbjct 22087838 AGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCT 22087897 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 118895 ||||| |||||||||||||| ||||| || || ||||||| | ||| || | ||||| Sbjct 22087898 TTGTACAGCATGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACCAGAGC 22087957 Query 118896 TCGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 | ||| || || || || | | |||||| | || || || ||||| || Sbjct 22087958 TGCTGAGCCTTCACCACACGC-TTCACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTT 22088016 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 ||||||||| || ||| | ||| ||||| || || | || || | || || Sbjct 22088017 TTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGA 22088076 Query 119015 CCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 119071 ||| ||| || |||| || | ||||||||| || ||||| ||||| || || | Sbjct 22088077 CCAGTTTTGGTTACTCTCC---ACTCTCTTCATGAACAGATCTGGAATCCACAGGGCATA 22088133 Query 119072 GAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 119130 |||||| || | | | ||| || | | || || || || ||||| |||| Sbjct 22088134 GAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGAAGT 22088192 Query 119131 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGA 119186 | | | ||| |||||| || |||||||||| || | | || ||| | Sbjct 22088193 CAAACACATCAAAGTGCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGTCTTTTG-TTC 22088251 Query 119187 CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCA 119246 || |||| | ||||| | ||||| ||| | || | | ||| || | | || Sbjct 22088252 CCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAAACTCTCAACATGGGCACCAGCCCG 22088311 Query 119247 TCGGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTG 119305 | ||| | ||||| || || ||| | | || | ||||| | | || Sbjct 22088312 TTGGAGTTACCATTGGTACCAGCGATGTAGCTCCCGGTT-GATCTGATACAGCTGACCGC 22088370 Query 119306 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 119365 || ||||| || || || | || || || | || |||| | | ||| || | || || Sbjct 22088371 CACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGCACACTGCTTAAGAGTGTCATAAAT 22088430 Query 119366 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGG 119425 || ||||| ||| | || | |||| |||||||||||| |||| || |||| | Sbjct 22088431 GCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACAGCTGTGGCCGGTT 22088490 Query 119426 TGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGT 119484 || || ||||||||||| ||||||| |||||| ||||| || | | |||| | || Sbjct 22088491 GGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGT 22088549 Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544 ||| ||||| | | | || |||||| | | || || || | || |||| ||| | Sbjct 22088550 TGTACGTCTCAATGGCTGCATCGATGTCTCTCTCATGGATCCCAACAGACACCCTCATGA 22088609 Query 119545 ACATGT 119550 ||||| Sbjct 22088610 GCATGT 22088615 >seq11 Length=48234189 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 ||||||||| | |||||||||| || || ||||||| || || | | |||||||| Sbjct 16878787 CTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATT--TAATGGTG 16878730 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| ||||| || || ||| |||| || || |||||||| |||||||| ||||| Sbjct 16878729 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTT 16878670 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 || || || || || |||| || ||||| | ||| Sbjct 16878669 CCGGTTTCTGTCTGCGACTCGATGATAGCGTACCA 16878635 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||||||||| |||| || || || |||||| Sbjct 16879682 TAGATGTTGCTGGTGTACGCCTCGATGGACTCATTGTTGCCCAGAATCTGAGCGGTGGAG 16879623 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||||||| || ||||| Sbjct 16879622 GCTGTGGGCATCGGCGCCATGAGCAGACTGTT 16879591 >seq4 Length=75030901 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||| |||||| ||||| || |||| ||||| Sbjct 61475774 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCCCTCTTCT 61475833 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || ||| ||| || || ||||||||||| |||||||| Sbjct 61475834 TCAGCCAGAAGATGGCAGCAAAGGAACCGGAGAAGAAGATTCCCTCCAC 61475882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618389613595320