Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 219 5e-52 >seq6 Length=67274854 Score = 219 bits (242), Expect = 5e-52 Identities = 960/1492 (64%), Gaps = 44/1492 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||| | ||| | | || || |||| | |||||| ||| | | | Sbjct 22088622 CCGCAGCACATGCTCATGAGGGTGTCTGTTGGGATCCATGAGAGAGACATCGATGCAGCC 22088563 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | | || ||||| ||||| ||||||||||||| Sbjct 22088562 ATTGAGACGTACAACCTGCTGTCAGAGAAGTG-GTTCACCCACGCCTCACCAACCCTCTT 22088504 Query 104341 CAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || || ||| | || || ||||||| |||||||| |||||| || || Sbjct 22088503 CAACGCAGGAAC--CAACCGGCCACAGCTGTCCAGCTGCTTCCTCCTCGCCATGAAAGAC 22088446 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || || |||| ||||||| | ||||||| | || || || | || Sbjct 22088445 GACAGCATCGAAGGCATTTATGACACTCTTAAGCAGTGTGCCCTCATTTCCAAATCCGCC 22088386 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCG---TAT-TCGGGG 104514 || || ||||| || || | ||| || || || | | || ||| | Sbjct 22088385 GGAGGCATTGGCGTGGCGGTCA--GCTGTATCAG---ATCAACCGGGAGCTACATCGCTG 22088331 Query 104515 G-ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || |||||| | || | || | | || ||| | | || | ||| || || | Sbjct 22088330 GTACCAATGGTAACTCCAACGGGCTGGTGCCCATGTTGAGAGTTTACAACAATACTGCTC 22088271 Query 104574 GCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCA 104629 ||||||| |||| | ||| | |||| ||| | | || | || || |||||| Sbjct 22088270 GCTATGTTGATCAGGGGGGGAA-CAAAAGACCTGGAGCCTTTGCCATGTACCTGGAGCCA 22088212 Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689 |||||| ||| | | || ||||| ||| || ||| ||| | |||||| | Sbjct 22088211 TGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAG 22088152 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 | | | || ||||||| || || |||||||||||||| |||||||||||||| | Sbjct 22088151 AGAGCCAGAGACCTCTTCTATGCCCTGTGGATTCCAGATCTGTTCATGAAGAGAGT---G 22088095 Query 104750 GAGAGTGGC---AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGC 104805 |||||| | || ||||| || | ||||| || || ||||| || ||| ||| Sbjct 22088094 GAGAGTAACCAAAACTGGTCCCTAATGTGTCCCAACGAGTGTCCTGGGCTGGACGAGTGC 22088035 Query 104806 CGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC 104865 | ||| |||||||||||| || ||||| || || || | || || ||| || || Sbjct 22088034 TGGGGG-GAGGAGTTTGAAAAACTGTACACTAAATATGAAAACGAGGGGAGGGTGAA-GC 22087977 Query 104866 GAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTA 104924 | |||| ||| | | ||| | || ||| | |||| || || || || || | Sbjct 22087976 GTGTGGTGAAGGCTCAGCAGCTCTGGTATGCCATTATTGAGTCCCAGACAGAAACGGGAA 22087917 Query 104925 CACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTG 104984 | ||||||||||| |||||||| || |||||| |||||||| || ||||| |||| Sbjct 22087916 CGCCATACATGCTGTACAAAGATGCATGTAACAGGAAGAGTAACCAGCAGAATCTGGGCA 22087857 Query 104985 TGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044 ||||| | ||| || || || ||| | | || | || |||||| ||| || Sbjct 22087856 CCATCAAATGCAGCAACCTGTGCACCGAAGTTGTTGAGTACACCAGCAAAGACGAGGTGG 22087797 Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACAT 105104 | ||||||||||| || || || |||||| || ||| || ||||| | ||| | Sbjct 22087796 CGGTGTGTAACCTTGCCTCCATTGCTCTCAACATGTACGTCACACCAGA---ACGGACTT 22087740 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 |||| | | || || || || ||| | | ||||||||| |||| || | Sbjct 22087739 TTGACTTCAAGAAGCTGGCATCTGTGACCAAAGTTATTGTCAAAAACCTCAACAAGGTCA 22087680 Query 105165 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 |||| | || | ||||| ||| ||| || || || | | | ||| | |||| Sbjct 22087679 TTGAAATCAACTACTACCCAGTTCCTGAAGCTGAGAAGTCCAACAAGCGCCACAGGCCAA 22087620 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATT 105284 | || | || ||||| ||| | || |||| ||||| || || | | || || Sbjct 22087619 TAGGAATTGGAGTTCAAGGTTTGGCAGATGCCTTCATCCTGATGCGTTATCCCTTCGAAA 22087560 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 | || || || | || | || ||||||||||| || |||| ||||| | Sbjct 22087559 GCCCAGAGGCTCAGTTGCTAAACATCCAGATTTTTGAGACCATCTACTACGCTGCTCTGG 22087500 Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 ||||||| | ||| | || | | || || || || |||| || ||||| || | Sbjct 22087499 AGGCGAGCTGCGAGCTAGCTGCCGAGTTCGGACCGTACGAGACCTACGAAGGTTCCCCTG 22087440 Query 105405 CTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGG--AAGGTGAGACCAAGCTTCACTAC 105460 ||| |||||| | || |||| || ||||||| ||| | || | | | Sbjct 22087439 --TCAGCAAGGGCATCCTGCAATACGACATGTGGGACAAGACGCCTACAGAC--CTGTGG 22087384 Query 105461 GACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCAT 105519 |||| ||||||| || || || ||| | | || | | || || || || | Sbjct 22087383 GACT-GGAAGCTGCTGAAAGAGAAGATCGCTAAACATGGCGTGAGAAATAGCCTGCTGCT 22087325 Query 105520 GGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 105579 || || ||||| ||||| |||||||| || ||| ||||||| || || | | | ||| | Sbjct 22087324 CGCCCCGATGCCCACAGCGTCCACCGCCCAGATCCTGGGTAACAACGAGTCCATCGAAGC 22087265 Query 105580 CTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAA 105639 |||||| | |||||||| | || |||| | |||||||| |||||| || Sbjct 22087264 CTACACCAGCAACATCTACACTCGCAGGGTCCTCTCTGGAGAGTTCCAGATTGTTAATCC 22087205 Query 105640 GCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 || || | | ||||| | |||| || || ||| | |||| |||||| Sbjct 22087204 TCACCTGCTCAAAGACCTGACGGAGAAGGGGCTGTGGAGCGAGGAGATGAAG 22087153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583217806388280