Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 197 2e-45 seq11 96.9 4e-15 seq4 87.8 2e-12 >seq6 Length=67274854 Score = 197 bits (218), Expect = 2e-45 Identities = 881/1380 (64%), Gaps = 39/1380 (3%) Strand=Plus/Plus Query 78483 GACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTT 78542 || |||||| | |||| || |||||| || | ||| || ||| ||||||||| Sbjct 22087195 GAGCAGGTGAGGATTAACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTT 22087254 Query 78543 GGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGG 78602 | | ||||| | |||| | ||||||||| |||| |||||||||||| || || || || Sbjct 22087255 GCTGGTGTAGGCTTCGATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGG 22087314 Query 78603 CATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG-- 78660 ||| || |||| ||| || ||| | | ||||| | ||||| | || || Sbjct 22087315 CATCGGGGCGAGCAGCAGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAG 22087374 Query 78661 ----CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTC 78716 | |||||| | || | | || | |||||||||| ||| ||||| |||| Sbjct 22087375 CTTCCAGTCCCACAGGTCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTT 22087434 Query 78717 GGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGA 78776 | | || || || | | | |||||||| | ||| ||| || || ||||| Sbjct 22087435 GCTGACAGGGGAACCTTCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCT 22087494 Query 78777 CTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCT- 78835 | | ||| || |||| ||| | | ||| || || |||| ||| | |||| Sbjct 22087495 CGCCTCCAGAGCAGCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTC 22087554 Query 78836 TGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGA 78895 ||| || ||||| | | | | || |||||| |||| |||| || || || || | Sbjct 22087555 TGGGCTT-TCGAAGGGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAA 22087613 Query 78896 TAGCGATCGGTCGGTGGCGCATGTTGCTCTT-TCGGGCCGCCTCGGTC-GGGTAAAAGTT 78953 | | || || | ||||||| ||||| ||| || | | | | | ||||| |||| Sbjct 22087614 TTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCAG--CTTCAGGAACTGGGTAGTAGTT 22087671 Query 78954 CCGATCGATGACGCGGTTCAGGTTACGCGTGACGA---CCCGAGTCACCTCGTACAATTT 79010 || ||||| ||| ||||| |||| | | ||||| || || Sbjct 22087672 GATTTCAATGACCTTGTTGAGGTTTT---TGACAATAACTTTGGTCACAGATGCCAGCTT 22087728 Query 79011 GGCGAAATCAAAAT---GATTTCCTTTGATGAAAGTCGGTAG-GCACAGCGATGCCAGGT 79066 ||| |||||| | | | | ||| | | | || ||| | || || |||| Sbjct 22087729 CTTGAAGTCAAAAGTCCGTTCTGGTGTGACGTACATGTTGAGAGCAATG-GAGGCAAGGT 22087787 Query 79067 TGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACG 79126 | ||||| ||| |||||| ||| | ||| | | ||| ||||||| || Sbjct 22087788 TACACACCGCCACCTCGTCTTTGCTGGTGTACTCAACAACTTCGGTGCACAGGTTGCTGC 22087847 Query 79127 ACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACA 79186 | ||||||||||| | |||| |||||| |||||| |||||| || || ||||| || Sbjct 22087848 ATTTGATGGTGCCCAGATTCTGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCA 22087907 Query 79187 TGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCC 79246 |||| ||||| || || || ||| || | || | | | ||||| | | | ||| Sbjct 22087908 TGTATGGCGTTCCCGTTTCTGTCTGGGACTCAATAATGGCATACCAGAGCTGCTGAGCCT 22087967 Query 79247 GGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCT 79306 || || ||| || |||| | || | ||||| | | || ||| Sbjct 22087968 TCACCACACGCTTCACCCTCCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCT 22088027 Query 79307 CCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGT 79366 |||| || ||| ||| || || ||||||| || ||||| ||| ||||| | || Sbjct 22088028 CCCCCCAGCACTCGTCCAGCCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGT 22088087 Query 79367 CCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGC 79426 |||| || ||| |||||| || || || ||||||||||| ||||||||| | | Sbjct 22088088 TACTCTCCACTCTCTTCATGAACAGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGG 22088147 Query 79427 AACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGT 79486 | | |||||| | || |||| |||||| || ||||| | | || || Sbjct 22088148 CTCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGT 22088207 Query 79487 GCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGT 79546 |||| |||||||| || ||||| || | || | ||| || ||||| | || | Sbjct 22088208 GCCATGGCTCCAGGTACATGGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACAT 22088267 Query 79547 ACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCG 79606 | || || || |||||| |||||| | ||||||||| | |||| || | || || | Sbjct 22088268 AGCGAGCAGTATTGTTGTAAACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGG 22088327 Query 79607 TCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTC-GAG-CAGTGGATT------CCGAT 79658 | || ||| ||| |||| ||| || || || ||| || || || Sbjct 22088328 TACCAGCGAT----GTA--GCTC--CCGGTTGATCTGATACAGCTGACCGCCACGCCAAT 22088379 Query 79659 GCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGAT 79718 ||| |||| | ||||| ||| | || |||| ||| || || || || ||||| ||||| Sbjct 22088380 GCCTCCGGCGGATTTGGAAATGAGGGCACACTGCTTAAGAGTGTCATAAATGCCTTCGAT 22088439 Query 79719 CGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGC 79778 |||||| ||||| |||| ||||||||||| |||| |||||| ||| || || || Sbjct 22088440 GCTGTCGTCTTTCATGGCGAGGAGGAAGCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGC 22088499 Query 79779 GTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 |||||||||||| || | ||||| ||||| |||| | || ||| | ||||||||| Sbjct 22088500 GTTGAAGAGGGTTGGTGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTC 22088559 >seq11 Length=48234189 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || || ||||||| ||| || || |||||||| | ||||| ||||||||||||| | Sbjct 16878762 ATCTCAGTGCACAGATTGCTGGATTTAATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 16878703 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||||||||| ||||| || Sbjct 16878702 TTGCAGGCGTCCTTGTAGAGCATGTACGGCGTTCCGGTTTC 16878662 >seq4 Length=75030901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 60331 TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCA 60390 ||||| | ||| | ||||| || |||| ||||||| |||||| |||| || || |||| Sbjct 61466846 TTTACCGGGTGGAGAACCCCTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAAACCA 61466905 Query 60391 ACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||||||||||| || || Sbjct 61466906 ACTTCTTTGAGAAGCGGGTCGGTGAGTA 61466933 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 60331 TTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCA 60390 ||||| | ||| | ||||| || |||| ||||||| |||||| |||| || || |||| Sbjct 61475076 TTTACCGGGTGGAGAACCCCTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAAACCA 61475017 Query 60391 ACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||||||||||| || || Sbjct 61475016 ACTTCTTTGAGAAGCGGGTCGGTGAGTA 61474989 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| |||||| |||||||||||||| || || ||| | | || |||||||| Sbjct 61466028 GCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTCGCTTCCATCTTCTGGCTG 61466087 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | ||||| ||||| || |||| ||| ||||||||| || | | |||||| Sbjct 61466088 AAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAG 61466147 Query 60111 G 60111 | Sbjct 61466148 G 61466148 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| |||||| |||||||||||||| || || || ||| || |||||||| Sbjct 61475894 GCCTTTGCTGCCGTGGAGGGAATCTTCTTCTCCGGTTCCTTTGCTGCCATCTTCTGGCTG 61475835 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | ||||| ||||| || |||| ||| ||||||||| || | | |||||| Sbjct 61475834 AAGAAGAGGGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTCATCAGCAGAGACGAG 61475775 Query 60111 G 60111 | Sbjct 61475774 G 61475774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548484366865680