Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq4 84.2 2e-11 seq12 82.4 8e-11 >seq6 Length=67274854 Score = 131 bits (144), Expect = 2e-25 Identities = 469/729 (64%), Gaps = 16/729 (2%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||| || | || | |||| || || |||||| | |||||||| ||||| Sbjct 22088560 TGAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCACCAACCCTCTTCAA 22088501 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || || || | || ||| |||| ||||||||||| | || ||||| || ||| Sbjct 22088500 CGCAGGAACCAACCGGCCACAGCTGTCCAGCTGCTTCCTCCTCGCCATGAAAGACGACAG 22088441 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||| || || || || ||| ||||||||| ||| ||||| | | || || Sbjct 22088440 CATCGAAGGCATTTATGACACTCTTAAGCAGTGTGCCCTCATTTCCAAATCCGCCGGAGG 22088381 Query 53422 TATCGGTAT---CCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 || || | | ||| | || | | | ||| | ||| || || || Sbjct 22088380 CATTGGCGTGGCGGTCAGCTGTA---TCAGATCAACCGGGAGCTACATCGCTGGTACCAA 22088324 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 || | || | || | ||||| ||| | | || | |||||| || || || || || Sbjct 22088323 TGGTAACTCCAACGGGCTGGTGCCCATGTTGAGAGTTTACAACAATACTGCTCGCTATGT 22088264 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAG----GGGTCGTTCGCCATCTACCTCGAGCCGTGGC 53594 | ||||| ||| | | ||| || | || ||||| ||||| ||||| |||| Sbjct 22088263 TGATCAGGG----GGGGAACAAAAGACCTGGAGCCTTTGCCATGTACCTGGAGCCATGGC 22088208 Query 53595 ACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCT 53654 || || | | || || || |||||| ||| || | || ||| | | Sbjct 22088207 ACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGAG 22088148 Query 53655 GCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGG 53714 | | ||||| || || ||||||||||| || || |||||| | | ||||||| Sbjct 22088147 CCAGAGACCTCTTCTATGCCCTGTGGATTCCAGATCTGTTCATGAAGAGAGTGGAGAGTA 22088088 Query 53715 ACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGT 53773 || | | |||| ||| ||||| || |||||||| || || || | | ||| || || Sbjct 22088087 ACCAAAACTGGTCCCTAATGTGTCCCAACGAGTGTCCTGGGCTGGACGAGTG-CTGGGGG 22088029 Query 53774 GAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTC 53833 ||||||||| | | |||| | || | | |||| | ||| ||| Sbjct 22088028 GAGGAGTTTGAAAAACTGTACACTAAATATGAAAACGAGGGGAGGGTGAAGCGTGTGGTG 22087969 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 ||||| | || | ||| |||| || | || |||| || ||||||||||| ||| Sbjct 22087968 AAGGCTCAGCAGCTCTGGTATGCCATTATTGAGTCCCAGACAGAAACGGGAACGCCATAC 22087909 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAA 53953 ||| ||||| ||| | ||| |||||| |||||| |||| | ||| ||||||| Sbjct 22087908 ATGCTGTACAAAGATGCATGTAACAGGAAGAGTAACCAGCAGAATCTGGGCACCATCAAA 22087849 Query 53954 TCGAGCAAC 53962 | |||||| Sbjct 22087848 TGCAGCAAC 22087840 >seq4 Length=75030901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||||||||| ||||| |||||||| || || |||| |||||||||||||| Sbjct 61466933 TACTCACCGACCCGCTTCTCAAAGAAGTTGGTTTTTCCCTCCAGGGAGATGTTCTCCATG 61466874 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| || ||||||| Sbjct 61466873 AAGTCAAAGGGGTTCT 61466858 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||||||||| ||||| |||||||| || || |||| |||||||||||||| Sbjct 61474989 TACTCACCGACCCGCTTCTCAAAGAAGTTGGTTTTTCCCTCCAGGGAGATGTTCTCCATG 61475048 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| || ||||||| Sbjct 61475049 AAGTCAAAGGGGTTCT 61475064 >seq12 Length=46076542 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | || || ||||| ||||| |||||||||||| Sbjct 34607894 GTGAAGATGTATCGAGGGCTGGCTGAGTCTTTTCCACCGTGCAGCCTGGTTCCAAACTGT 34607835 Query 152089 -CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||||| |||| || ||||| ||||||||| ||||| || | ||| || || || Sbjct 34607834 CCCAGA-GGCTGCAGCAGGTTCAGGTTGTTGCTTCCCACAAAGTCCTGGGCTAAGTT 34607779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547175663340600