Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq11 178 1e-39 >seq11 Length=48234189 Score = 178 bits (196), Expect = 1e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||||||||| ||||| || ||||| || || || ||||| ||| || Sbjct 21620350 ATCATGCAGATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTCGAGCCA 21620291 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| | ||||| ||| | || ||||| || ||||||||||| || || || ||||| Sbjct 21620290 AGTGACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGAT 21620231 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | || || |||||||| ||||| || || |||| || ||||| ||||||| Sbjct 21620230 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTAC 21620171 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || | || ||||| ||||| || || || ||| ||||||| | |||||| Sbjct 21620170 AACATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGA 21620120 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || || || ||||||||| || || Sbjct 37620760 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGAGCCAAGT 37620701 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||| || || || ||||||||||| || || ||||| |||||| Sbjct 37620700 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 37620641 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| || || || || |||| || ||||| ||||||| || Sbjct 37620640 CAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCAGACTACAAC 37620581 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| |||||||| | ||||| Sbjct 37620580 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTTAGAGGTGG 37620534 Score = 174 bits (192), Expect = 2e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || || || ||||| ||| || | Sbjct 21620120 AATGCAGATCTTTGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGCCAAG 21620061 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | || ||||| || ||||||||||| || || || ||||| || Sbjct 21620060 TGACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 21620001 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || || |||| || ||||| ||||||| || Sbjct 21620000 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAA 21619941 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| ||||| || || || ||| ||||||| | ||||| || Sbjct 21619940 CATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGGCA 21619890 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || || || ||||| ||| || || Sbjct 37620532 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCAAGT 37620473 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 37620472 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 37620413 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| ||||||| || Sbjct 37620412 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 37620353 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| ||||| || || || ||| ||||||| | |||||| Sbjct 37620352 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGA 37620305 Score = 122 bits (134), Expect = 1e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 || || || || ||||||||||| || || ||||| ||||||||| | || || |||||| Sbjct 37620029 AAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGATCTTTGCT 37619970 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || || || || || |||| |||||||| ||||||| || |||| ||||| ||||| Sbjct 37619969 GGCAAACAGCTGGAAGATGGCCGTACCCTCTCAGACTACAACATCCAGAAGGAGTCCACC 37619910 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || || || ||| |||||||| | || ||||| Sbjct 37619909 CTCCACCTTGTCCTGCGTCTTAGAGGCGGACA 37619878 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| || || || ||||||| ||| || ||||| || |||||||| | |||||| Sbjct 16878770 ACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGTGCCCAGGTTCTGCTGGTTGC 16878711 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| ||||||||| || ||||| || ||| |||| Sbjct 16878710 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTTCCGGTTTCTGTCTGCGACT 16878651 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || ||| |||| ||| | || | ||||| ||||| Sbjct 16878650 CGATGATAGCGTACCACAGCTGCTGAGCCTTCACCAC 16878614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570268360994640