Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq8 149 5e-31 seq3162 95.1 1e-14 >seq8 Length=57680405 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || || | |||||| |||||||| ||||| |||| |||||||||||||| || || Sbjct 19731634 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGAAGAGCATAGCTGGCGATGTTGAACGGC 19731575 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| || ||||| || |||| | |||||| |||||||| || ||||| || || | Sbjct 19731574 ACCCCAAGACCCATATCGGCCGATCGCTGGTACAGCTGACAGGACAGCTCGCCATCACAG 19731515 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 ||||| ||||| |||| ||||||||||| || |||||||||||| Sbjct 19731514 ACGTAGAACTGGCACAGAGCGTGGCACGGGGGCAGAGCCATGAGG 19731470 Score = 145 bits (160), Expect = 6e-30 Identities = 133/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||||||||| || || |||||||||||||| |||||||| |||||||| || Sbjct 19730756 CATATCTTTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGATC 19730697 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || |||| | ||||||| ||||||| |||| | | ||| |||||||| || Sbjct 19730696 CCCCTCCTCTCTGTCCGTGAAGCCCAGTTTGTCCAGAAAGGCCCGGGACCCGTTGGCATC 19730637 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||| ||| | || || || || || ||||| |||| ||||||||||| Sbjct 19730636 CCAAATCCTCACACCTTTGTCTGACAGCTCCTTGGCATTTGTGGACCC 19730589 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 |||| |||||||| || |||| |||||| |||| |||||||||||| ||||||||| | Sbjct 19731391 CTTTAGGGTTCCAAGCACACATGATGATCCGCCGGTCTTCTGGGTTTTTCCTGATGGTAT 19731332 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30218 | | | | || |||||||| || || ||| ||| | ||| |||| Sbjct 19731331 CAATGACTTTCTGCAGCTGGTCGACACCCTGCCCTGTGTAATCTG 19731287 >seq3162 Length=15747 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 110404 AGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 110463 |||||||||||||| || | ||| || | ||| | ||||||| ||||| || ||||| Sbjct 3317 AGCTCCCTGCTGAGAACAATGTTGATGCGGTCCTTGAGAGGTCGGTTCTTCTCCGGGATC 3376 Query 110464 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 || ||||| |||||||| ||||| || ||||| |||||||| ||| Sbjct 3377 GAAAACCAGGTCTTTCTCCCCATGATGACCACATTCTGCTTTCCT 3421 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 110569 GGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATA 110628 |||||||| ||||| |||||||| |||||||| |||| || |||||| | || |||||| Sbjct 5511 GGATGCCAGGGCAGGTCTCCGTTCTTCCCGATACCCAGATCAGGACACACCGCGACGATA 5570 Query 110629 CCGTTCAGAATGAGGGGCATGGTTCG 110654 |||||||||| ||| |||||| || Sbjct 5571 CCGTTCAGAACCCGGGACATGGTCCG 5596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406281198598524