Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq11 113 3e-20 >seq11 Length=48234189 Score = 113 bits (124), Expect = 3e-20 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||||||||||| || | ||||| ||| |||||| || ||||| || ||||| Sbjct 37620533 GCCACCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 37620592 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || ||||| || ||||| || | | ||| ||||| || || Sbjct 37620593 GAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGG 37620652 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT--CTTCGCTCTC 34655 | || |||||||| |||| || | ||| ||| | || |||| ||| | ||| Sbjct 37620653 GATGCCTTCCTTGTCCTGGATC-TTGGCTTTCACGTTCTCGATGGTGTCACTTGG--CTC 37620709 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||| ||| || || ||||| || | || || ||||| ||||||||||| Sbjct 37620710 AACCTCCAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 37620763 Score = 91.5 bits (100), Expect = 9e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||||||||||| || | ||||| ||| |||||| || ||||| || ||||| Sbjct 37619881 CCGCCTCTAAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAG 37619940 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| || ||||| || | | ||| ||||| || || Sbjct 37619941 AGGGTACGGCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGG 37620000 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | || |||||||| |||||| Sbjct 37620001 ATGCCTTCCTTGTCCTGGATCTT 37620023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314706980482001