Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq11 111 1e-19 >seq11 Length=48234189 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || ||| | || || || || || || || Sbjct 21620348 CATGCAGATCTTTGTCAAGACCCTTACTGGAAAGACCATCACCCTGGAGGTCGAGCCAAG 21620289 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| || || || ||||| |||||||| || || ||||| Sbjct 21620288 TGACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 21620229 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || | ||||| | ||| | || || ||||| Sbjct 21620228 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAA 21620169 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | || | || ||||| || ||||||| || Sbjct 21620168 CATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGAAT 21620118 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || || ||| | || || || || || || || Sbjct 37620533 CATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTCGAGCCAAG 37620474 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| || || || ||||| |||||||| || || ||||| Sbjct 37620473 TGACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCA 37620414 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || | ||||| | ||| | || || ||||| Sbjct 37620413 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAA 37620354 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | || | || ||||| || ||||||| || Sbjct 37620353 CATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGGAAT 37620303 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | || || || || || || || Sbjct 21620119 ATGCAGATCTTTGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGCCAAGT 21620060 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| |||||| || || || ||||| |||||||| || || ||||| Sbjct 21620059 GACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAG 21620000 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || | ||||| | ||| | || || |||||| Sbjct 21619999 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAAC 21619940 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| ||| | || | || ||||| || ||||||| Sbjct 21619939 ATTCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGTGG 21619893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434886341077440