Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8 156 4e-33 >seq8 Length=57680405 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || ||||| || ||||| || |||||||||||| | || ||||| ||||||||| || Sbjct 19731462 GACCTCCCCCTCATGGCTCTGCCCCCGTGCCACGCTCTGTGCCAGTTCTACGTCTGTGAT 19731521 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||| ||||| || || ||||||| || ||||| | |||||||||||| Sbjct 19731522 GGCGAGCTGTCCTGTCAGCTGTACCAGCGATCGGCCGATATGGGTCTTGGGGTGCCGTTC 19731581 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || ||||| ||||| |||||||||||||| Sbjct 19731582 AACATCGCCAGCTATGCTCTTCTCACCTACATGATCGCTCA 19731622 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 |||||||||||||| ||||| ||||| || || || ||||||||||||||||| | ||| Sbjct 19731622 TGAGCGATCATGTAGGTGAGAAGAGCATAGCTGGCGATGTTGAACGGCACCCCAAGACCC 19731563 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || ||||||| || || ||||| ||||||||||| |||| ||||||||| ||| Sbjct 19731562 ATATCGGCCGATCGCTGGTACAGCTGACAGGACAGCTCGCCATCACAGACGTAGAACTGG 19731503 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | |||||||||||| || ||||| || ||||| || Sbjct 19731502 CACAGAGCGTGGCACGGGGGCAGAGCCATGAGGGGGAGGTC 19731462 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 |||| |||| || |||||||||| || | || |||| ||| ||||| || |||| Sbjct 19730588 GGGGTCCACAAATGCCAAGGAGCTGTCAGACAAAGGTGTGAGGATTTGGGATGCCAACGG 19730647 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCC 34407 ||| || | |||||||||||| | ||| ||| | | |||||||| || |||| || Sbjct 19730648 GTCCCGGGCCTTTCTGGACAAACTGGGCTTCACGGACAGAGAGGAGGGGGATCTGGGACC 19730707 Query 34408 GGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||| ||||||||||| |||||||| || ||||| Sbjct 19730708 TGTGTACGGTTTCCAGTGGAGGCACTTTGGTGCAGAGTA 19730746 Score = 107 bits (118), Expect = 2e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||||||||| ||||| || || |||| || |||||||| Sbjct 19730746 TACTCTGCACCAAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGATCCCCCTCCTCT 19730687 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| | |||||||||||| | || ||||||| || ||||| ||| || Sbjct 19730686 CTGTCCGTGAAGCCCAGTTTGTCCAGAAAGGCCCGGGACCCGTTGGCATCCCAAATCCTC 19730627 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCC 7057 || || | || |||||||||| || |||| |||| Sbjct 19730626 ACACCTTTGTCTGACAGCTCCTTGGCATTTGTGGACCCC 19730588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448229357457840