Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq11 196 1e-44 seq1 89.7 1e-12 >seq11 Length=48234189 Score = 196 bits (216), Expect = 1e-44 Identities = 175/218 (80%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 37620549 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCT 37620608 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || ||||||||||| | |||||||||||| Sbjct 37620609 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 37620668 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||||||||| |||||||||||| ||| |||||||| || ||||| Sbjct 37620669 TGGATCTTGGCTTTCACGTTCTCGATGGTGTCA---CTTGGCTCAACCTCCAGGGTGATG 37620725 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || ||||| ||||| ||||| | |||||| || Sbjct 37620726 GTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 37620763 Score = 165 bits (182), Expect = 2e-35 Identities = 167/216 (77%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || || ||||| || || | ||||| | |||||| Sbjct 21619908 AGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCT 21619967 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || | || || || || || | |||||||||||| Sbjct 21619968 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 21620027 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||| || || || ||||||||| ||| || ||||| || ||||| Sbjct 21620028 TGGATCTTAGCTTTGACATTCTCAATGGTGTCA---CTTGGCTCGACCTCCAGGGTGATG 21620084 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| ||||| ||||| ||||| | ||||||| Sbjct 21620085 GTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCATT 21620120 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || || ||||| || || | ||||| | |||||| Sbjct 21620136 AGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCT 21620195 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || | || || || || || | |||||||||||| Sbjct 21620196 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 21620255 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||| || || || ||||||||| ||| || ||||| || ||||| Sbjct 21620256 TGGATCTTAGCTTTGACATTCTCAATGGTGTCA---CTTGGCTCGACCTCCAGGGTGATG 21620312 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || ||||| ||||| | |||||| Sbjct 21620313 GTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCAT 21620347 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || || ||||| || || | ||||| | |||||| Sbjct 37620321 AGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCT 37620380 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| || | || || || || || | |||||||||||| Sbjct 37620381 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 37620440 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||| || || || ||||||||| ||| || ||||| || ||||| Sbjct 37620441 TGGATCTTAGCTTTGACATTCTCAATGGTGTCA---CTTGGCTCGACCTCCAGGGTGATG 37620497 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| ||||| ||||| | |||||| Sbjct 37620498 GTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620532 Score = 127 bits (140), Expect = 5e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 37619896 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCT 37619955 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || ||||||||||| | |||||||||||| Sbjct 37619956 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 37620015 Query 211023 TGGATCTT 211030 |||||||| Sbjct 37620016 TGGATCTT 37620023 >seq1 Length=98476147 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||||||||||| | | || ||| ||||||||| || ||| Sbjct 27764855 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCACGTCTAAGAATGGAAAAGAGACATAAC 27764914 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAAT---ACAGTGTTTTATCAAAGACAACAAGTGT 139938 || |||||||||| || |||| || | || | | || ||| |||| ||||| Sbjct 27764915 TATGTGAGAAAAGTAGCCGAGACAGCTGTCCAACTCTTTGTTTCCAATGACA--AAGTG- 27764971 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || |||| || || || || |||||||| | || | ||| Sbjct 27764972 AATGTGGCGGGGATGGTCCTGGCTGGCTCTGCTGACTTCAAGACTGAACTTAGTCAGTCT 27765031 Query 139999 GACTTTTTTGACCC 140012 ||| | |||||||| Sbjct 27765032 GACATGTTTGACCC 27765045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159064419908405