Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5897 136 9e-27 seq11 113 1e-19 seq5666 105 2e-17 >seq5897 Length=19527 Score = 136 bits (150), Expect = 9e-27 Identities = 138/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | ||||| || || |||| || |||||||||||||| ||||||||| | || || Sbjct 5668 CCAAATCTACAATGTCATCGTTACAGCACATGCCTTTGTTATAATTTTCTTTATAGTAAT 5727 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || | || || |||||||||||||||||| | || || | || || || || ||||| Sbjct 5728 ACCAATCATAATTGGCGGTTTCGGAAATTGACTAGTACCCCTCATAATCGGAGCACCTGA 5787 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||| |||||||| | | ||||| ||||| |||||| | ||||| || ||||| |||| Sbjct 5788 TATAGCTTTTCCCCGAATAAACAACATAAGCTTTTGACTTCTACCCCCCTCCTTCCTTCT 5847 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || |||||||||||||| ||||||||||||||||| || ||||| ||||| || | Sbjct 6241 TTCTGGGTGACCAAAAAATCAAAATAAATGTTGATAAAGAATTGGATCTCCTCCTCCAGC 6182 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 ||| |||| || | ||||| ||||||| ||| || Sbjct 6181 TGGGTCAATGAAAGTCGTATTTAAATTTCGATCTGT 6146 >seq11 Length=48234189 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||||||||||||||| ||||| || || |||| ||||| || | | || | Sbjct 37620542 AAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCG 37620601 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| ||||| || ||||| ||||| || | || ||||| || || || ||||| Sbjct 37620602 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTC 37620661 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 |||||| |||||||| ||||| ||||||||||| | || || || | || Sbjct 37620662 CTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCACTTGGCTCAACCTCCAGGGT 37620721 Query 225675 GATCGTCTTGCCCGT 225689 ||| ||||| || || Sbjct 37620722 GATGGTCTTACCAGT 37620736 Score = 104 bits (114), Expect = 6e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||||||||||||||| ||||| || || |||| ||||| || | | || | Sbjct 37619889 AAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACG 37619948 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| ||||| || ||||| ||||| || | || ||||| || || || ||||| Sbjct 37619949 GCCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTC 37620008 Query 225615 CTTGTCTTGGATCTT 225629 |||||| |||||||| Sbjct 37620009 CTTGTCCTGGATCTT 37620023 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||||||||| ||||| || || || | ||||| || | | || | ||||| Sbjct 21619907 CAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATC 21619966 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || || || ||||||||||| Sbjct 21619967 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTC 21620026 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| || ||| || |||||||| | || || || | ||||| || Sbjct 21620027 CTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGT 21620086 Query 225681 CTTGCCCGT 225689 ||| || || Sbjct 21620087 CTTTCCTGT 21620095 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||||||||| ||||| || || || | ||||| || | | || | ||||| Sbjct 21620135 CAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATC 21620194 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || || || ||||||||||| Sbjct 21620195 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTC 21620254 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| || ||| || |||||||| | || || || | ||||| || Sbjct 21620255 CTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGT 21620314 Query 225681 CTTGCCCGT 225689 ||| || || Sbjct 21620315 CTTTCCAGT 21620323 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||||||||||||||| ||||| || || || | ||||| || | | || | ||||| Sbjct 37620320 CAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATC 37620379 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| ||||| ||||| || | || || || || || || ||||||||||| Sbjct 37620380 TTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTC 37620439 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| || ||| || |||||||| | || || || | ||||| || Sbjct 37620440 CTGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGTGATGGT 37620499 Query 225681 CTTGCCCGT 225689 ||| || || Sbjct 37620500 CTTACCAGT 37620508 >seq5666 Length=5762 Score = 105 bits (116), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 7/182 (4%) Strand=Plus/Minus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT-------TTTCTTTTTTGTT 7608 |||| || ||||| |||| || |||||||||||||| || ||||||| | || Sbjct 1581 TTTATAATGTTATGGTTACAGCACATGCCTTTGTTATAATCTATAATTTTCTTTATAGTA 1522 Query 7609 ATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCT 7668 || || | || || |||||||||||||||||| | || || | || || || || ||| Sbjct 1521 ATACCAATCATAATTGGCGGTTTCGGAAATTGACTAGTACCCCTCATAATCGGAGCACCT 1462 Query 7669 GATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTT 7728 ||||| |||||||| | | ||||| || || || ||| | ||||| || || || || Sbjct 1461 GATATAGCTTTTCCTCGAATAAACAACATGAGCTTCTGACTTCTACCTCCCTCTTTTCTT 1402 Query 7729 CT 7730 || Sbjct 1401 CT 1400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192441097932518