Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq8 134 1e-26 seq3162 93.3 3e-14 >seq8 Length=57680405 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || || | |||||| |||||||| ||||| |||| |||||||||||||| || ||| Sbjct 19731634 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGAAGAGCATAGCTGGCGATGTTGAACGGC 19731575 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || ||||| || | || | |||||| ||||| || || ||||| || || | Sbjct 19731574 ACCCCAAGACCCATATCGGCCGATCGCTGGTACAGCTGACAGGACAGCTCGCCATCACAG 19731515 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| ||||| |||| || |||||||| || || |||||||| Sbjct 19731514 ACGTAGAACTGGCACAGAGCGTGGCACGGGGGCAGAGCCATGAG 19731471 Score = 129 bits (142), Expect = 5e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| |||||||| |||||||| || ||||| || |||| | |||| Sbjct 19730734 AAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGATCCCCCTCCTCTCTGTCCGTGAAG 19730675 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| |||| | | ||| |||||||| ||||| ||| | || || || || Sbjct 19730674 CCCAGTTTGTCCAGAAAGGCCCGGGACCCGTTGGCATCCCAAATCCTCACACCTTTGTCT 19730615 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| |||| ||||||||||| Sbjct 19730614 GACAGCTCCTTGGCATTTGTGGACCC 19730589 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 |||| |||||||| ||||||| |||||| |||| |||||||||||| ||||||||| | Sbjct 19731391 CTTTAGGGTTCCAAGCACACATGATGATCCGCCGGTCTTCTGGGTTTTTCCTGATGGTAT 19731332 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | | || |||||||| || || ||| ||| | ||| |||| Sbjct 19731331 CAATGACTTTCTGCAGCTGGTCGACACCCTGCCCTGTGTAATCTG 19731287 >seq3162 Length=15747 Score = 93.3 bits (102), Expect = 3e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 114449 ACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCTGCCACG 114508 ||||||||||| ||||| |||||||| |||||||| |||| || |||||| | || ||| Sbjct 5508 ACCGGATGCCAGGGCAGGTCTCCGTTCTTCCCGATACCCAGATCAGGACACACCGCGACG 5567 Query 114509 ATACCGTTCAGAATGAGGGGCATGGTTCG 114537 ||||||||||||| ||| |||||| || Sbjct 5568 ATACCGTTCAGAACCCGGGACATGGTCCG 5596 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 114287 AGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATG 114346 |||||||||||||| || | ||| | | ||| | ||||||| ||||| || ||||| Sbjct 3317 AGCTCCCTGCTGAGAACAATGTTGATGCGGTCCTTGAGAGGTCGGTTCTTCTCCGGGATC 3376 Query 114347 GAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || ||||| |||||||| ||||| || ||||| |||||||| ||| Sbjct 3377 GAAAACCAGGTCTTTCTCCCCATGATGACCACATTCTGCTTTCCT 3421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406134009177742