Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq8 149 5e-31 seq9 123 2e-23 >seq8 Length=57680405 Score = 149 bits (164), Expect = 5e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || || | |||||| |||||||| ||||| |||| |||||||||||||| || || Sbjct 19731634 AGTCCTGTAATGTGAGCGATCATGTAGGTGAGAAGAGCATAGCTGGCGATGTTGAACGGC 19731575 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || ||||| || |||| | |||||| |||||||| || ||||| ||||| | Sbjct 19731574 ACCCCAAGACCCATATCGGCCGATCGCTGGTACAGCTGACAGGACAGCTCGCCATCACAG 19731515 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||||| ||||| || | ||||||||||| || |||||||||||| Sbjct 19731514 ACGTAGAACTGGCACAGAGCGTGGCACGGGGGCAGAGCCATGAGG 19731470 Score = 141 bits (156), Expect = 7e-29 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||||||||| || || |||||||| ||||| |||||||| |||||||| || Sbjct 19730756 CATATCTTTGTACTCTGCACCAAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGATC 19730697 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| || |||| | ||||||| ||||||| |||| | | ||| |||||||| || Sbjct 19730696 CCCCTCCTCTCTGTCCGTGAAGCCCAGTTTGTCCAGAAAGGCCCGGGACCCGTTGGCATC 19730637 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| ||| | || || || || || ||||| |||| ||||||||||| Sbjct 19730636 CCAAATCCTCACACCTTTGTCTGACAGCTCCTTGGCATTTGTGGACCC 19730589 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27380 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 27439 |||| |||||||| || |||| |||||| |||| |||||||||||| ||||||||| | Sbjct 19731391 CTTTAGGGTTCCAAGCACACATGATGATCCGCCGGTCTTCTGGGTTTTTCCTGATGGTAT 19731332 Query 27440 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCT 27483 | | | | || |||||||| || || ||| ||| | ||| ||| Sbjct 19731331 CAATGACTTTCTGCAGCTGGTCGACACCCTGCCCTGTGTAATCT 19731288 >seq9 Length=57367160 Score = 123 bits (136), Expect = 2e-23 Identities = 210/301 (70%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 69019 CCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGA 69078 ||| |||||| || |||||| | |||||||||| || ||||||| ||| | | |||| Sbjct 1789243 CCACACTGACGATCGGACCCATGAAGGACACAGAATACAAAGACAAGCCAGAGGAAGTGA 1789184 Query 69079 ACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGT-G 69137 | || || | |||||||| | |||||| | | | ||||||||||||||||| | Sbjct 1789183 ATGGGTGCAGCAAGTTTTACCTTCCCACCAAATTACAGTTTCAGGTCATCGGTTATGTGG 1789124 Query 69138 ACGGGAACTC-CATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGT 69196 | || ||| |||| ||||| ||||| | ||||||| |||| || | || | Sbjct 1789123 AAGGAGTCTCGTTTACC--TGTGAGCAGCTGATTCTGATGATAAACGAGAACGGGGAGTT 1789066 Query 69197 GTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGA 69256 || || ||||| ||||| || ||||| |||||||| | | | || | | | Sbjct 1789065 TTATGGTTATGATGGAGATCAGATGCATCTGGTGGCTTCCAGCATAGAGGAACTAATTCA 1789006 Query 69257 AGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATAT 69316 | | ||| | | ||||||| ||| | |||||||||| | || || ||||||||| |||| Sbjct 1789005 AAATGGATTGGACTATCCTTCATCCAAGAGCTATTACTACGGAGAAGCCTTCAAAGATAT 1788946 Query 69317 G 69317 | Sbjct 1788945 G 1788945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369480643633007