Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 545 3e-150 seq11 98.7 1e-15 >seq6 Length=67274854 Score = 545 bits (604), Expect = 3e-150 Identities = 1304/1961 (66%), Gaps = 23/1961 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||||| | |||| || | || | || || ||||||||| Sbjct 22087151 TTCTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTA 22087210 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || || || |||||||| | || || |||||||| || || ||||| || | ||| Sbjct 22087211 ACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCTTCG 22087270 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || || | || Sbjct 22087271 ATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGCAGC 22087330 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | |||||||| | |||||| | ||| || ||||| || ||||| ||||| || Sbjct 22087331 AGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCACAGG 22087390 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 |||| ||| ||||| | |||||||| || || || || || || || || Sbjct 22087391 TCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGAACCT 22087450 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | || || || || ||||| || | ||||||| || || ||||| |||| || Sbjct 22087451 TCGTAGGTCTCGTACGGTCCGAACTCGG---CAGCTAGCTCGCAGCTCGCCTCCAGAGCA 22087507 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 |||| || || || || ||||||| | || || || || || || || || Sbjct 22087508 GCGTAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAAG 22087567 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 |||||| | | || || ||||||||||| || || ||||||||||| || || || || Sbjct 22087568 GGATAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTG 22087627 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | ||| ||||| | | |||||| |||| || || || || || || || | || Sbjct 22087628 TGGCGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCTTG 22087687 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 ||||| ||| | |||| ||||| ||| || || || ||||| | | Sbjct 22087688 TTGAGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCAAAAGTCCGT 22087747 Query 77658 TCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 ||| | || ||||||| | ||| || || || || ||||| || || ||||| | Sbjct 22087748 TCTGGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCT 22087807 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 | ||| || | | | ||||| || || || || |||||||| ||||||||||| Sbjct 22087808 TTGCTGGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTC 22087867 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||| ||||| | || |||| || || || || || | || || || ||||| Sbjct 22087868 TGCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCT 22087927 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATCATAGATTTGTATCG 77893 |||| || || ||||| | | ||||| | || ||| || | || | || | Sbjct 22087928 GTCTGGGACTCAATAATGGCATACCAGA-GCTGCTGAGCCTTCACCACACGCTTCACCCT 22087986 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || ||| ||||||||| ||| || || |||||| || || ||||| || |||| Sbjct 22087987 CCCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCAG 22088046 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 ||||| || || || || ||||| | ||||||| | || |||| ||||| Sbjct 22088047 CCCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCAT 22088106 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || ||||| || ||||| || ||| || || |||| || ||| || || || ||||| Sbjct 22088107 GAACAGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCC 22088166 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 ||| ||||| || || || || || || | | |||| | |||||||| || || || || Sbjct 22088167 TGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACAT 22088226 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | ||||||||| ||| || || |||||||| | ||| | || || || || || Sbjct 22088227 GGCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTA 22088286 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 |||||||||||| || | | ||||| || | ||||| || |||| || || || || Sbjct 22088287 AACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTCCC 22088346 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 ||| | ||| || | | | || || ||||| || || || || || || Sbjct 22088347 GGTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGC 22088406 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 || | || | || || || || || || || ||||| || ||||| || || || Sbjct 22088407 ACACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAA 22088466 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 ||||| |||| || | | |||||||| || || | || || || || || || Sbjct 22088467 GCAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGT 22088526 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 ||||| || || || || || ||||| || ||||| |||| || ||||| | | ||| Sbjct 22088527 GAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCTCATG 22088586 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 || || || | || | ||| | ||| ||||| || | || || || ||| || Sbjct 22088587 GATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATTGAT 22088646 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 |||| || || || |||| ||||| || || || ||||||| || || ||||| Sbjct 22088647 CTTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATCTCT 22088706 Query 78614 CTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGT 78673 |||||||| || | ||||| || ||||||| | |||||| | ||| || Sbjct 22088707 GTCGTAAATTATGGCCGAATTGAGGCGGTCTTTGTTCTCCAGAACAATGT---TGAGCGT 22088763 Query 78674 ---AGTTGAAATAATAGGAGATCGTACACCATTTT--TAGGATTAACATAGTTAAATAAA 78728 |||| || || || || || | | | || |||||| | ||||| | | Sbjct 22088764 CTCTTTTGAGATCATGGGGGA--GTGCTGCTTGTTCAGAGGATTGATGTAGTTGTACAGG 22088821 Query 78729 TCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATT 78788 |||||||| || |||||||| | |||||| || || ||||| || || || ||||| || Sbjct 22088822 TCTTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTTGAGACAGCGATC 22088881 Query 78789 CTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCC 78848 ||||| || ||||| ||||| || || |||| || || ||||| || ||||| || Sbjct 22088882 CTTGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGTCAGTGTGGCAGCAATTTCGGCT 22088941 Query 78849 GCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATG 78908 || | | || | ||| | ||| ||||| || | || | || || || || ||||| Sbjct 22088942 GCCAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATT 22089001 Query 78909 GCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCT-AATACG 78967 | ||||| | ||||| || || || | || | || || || || |||| || || Sbjct 22089002 GTGATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAGCTTCTGGATGCG 22089060 Query 78968 AGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||| |||||||||||||| || || ||| | || ||||| Sbjct 22089061 AGAGGTGATTTTATCAAACATGACTCGCTCATGGCGTCCAT 22089101 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| |||||||| | ||||| ||| | || || || || || || | Sbjct 22086857 TCCAACCGTAGAAGTGCATGCTGGATAGTTTTCCATAGTTTGGCTCTGCGATGTGGATGT 22086916 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| |||||| || || || ||| | || || | || || ||||| |||| | |||| Sbjct 22086917 TCAGCGACTGGCTCTGGTCTATGTAGGCACCACGGTCGGCAGCCATCTTTAATACAGTCT 22086976 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||||| |||||| | | || || | ||||||||||| Sbjct 22086977 TCTGGGAGATTTCCCAAACAGTTTTATACAGCTGCTTCAAATCATCTGGAA 22087027 >seq11 Length=48234189 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 77705 TACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGT 77764 |||||||| ||| | || | || |||||| || || ||||| || |||| || || Sbjct 16878790 TACCTCATCCTTGTTTGTGTACTCTACTATCTCAGTGCACAGATTGCTGGATTTAATGGT 16878731 Query 77765 GCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGT 77824 |||||| || || ||||||||||| | ||||| | |||||| || || || |||| || Sbjct 16878730 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGT 16878671 Query 77825 CCCGGTTTCAATCTGTGATTCGATAATAG 77853 |||||||| |||| || ||||| |||| Sbjct 16878670 TCCGGTTTCTGTCTGCGACTCGATGATAG 16878642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694617594226080