Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6 569 3e-157 seq11 96.9 5e-15 >seq6 Length=67274854 Score = 569 bits (630), Expect = 3e-157 Identities = 1301/1944 (67%), Gaps = 23/1944 (1%) Strand=Plus/Plus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || |||||| |||| || | || | || || ||||||||| Sbjct 22087151 TTCTTCATCTCCTCGCTCCACAGCCCCTTCTCCGTCAGGTCTTTGAGCAGGTGAGGATTA 22087210 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 ||||| || || |||||||| | || || |||||||| || || ||||| || | ||| Sbjct 22087211 ACAATCTGGAACTCTCCAGAGAGGACCCTGCGAGTGTAGATGTTGCTGGTGTAGGCTTCG 22087270 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || || | || Sbjct 22087271 ATGGACTCGTTGTTACCCAGGATCTGGGCGGTGGACGCTGTGGGCATCGGGGCGAGCAGC 22087330 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | |||||||| | |||||| | ||| || ||||| || ||||| ||||| || Sbjct 22087331 AGGCTATTTCTCACGCCATGTTTAGCGATCTTCTCTTTCAGCAGCTTCCAGTCCCACAGG 22087390 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 |||| || ||||| | |||||||| || || || ||||| || || || Sbjct 22087391 TCTGTAGGCGTCTTGTCCCACATGTCGTATTGCAGGATGCCCTTGCTGACAGGGGAACCT 22087450 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | ||| || ||||||| ||||| |||||||| | ||| || Sbjct 22087451 TCGTAGGTCTCGTACGGTCCGAACTCGGCAGCTAGCTCGCAGCTCGCCTCCAGAGCAGCG 22087510 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || || || || || ||||||| | || || || || || | || || || ||| Sbjct 22087511 TAGTAGATGGTCTCAAAAATCTGGATGTTTAGCAACTGAGCCTCTGGGCTTTCGAAGGGA 22087570 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | || || || |||||||| | || ||||||||||| || || || || || Sbjct 22087571 TAACGCATCAGGATGAAGGCATCTGCCAAACCTTGAACTCCAATTCCTATTGGCCTGTGG 22087630 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| ||||| | |||||||| |||| ||||| || || || || || | || ||| Sbjct 22087631 CGCTTGTTGGACTTCTCAGCTTCAGGAACTGGGTAGTAGTTGATTTCAATGACCTTGTTG 22087690 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 || ||| |||||| ||||| ||| || || || ||||| | | ||| Sbjct 22087691 AGGTTTTTGACAATAACTTTGGTCACAGATGCCAGCTTCTTGAAGTCAAAAGTCCGTTCT 22087750 Query 76256 A---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TAG 76310 | || |||| || ||||| || || || || ||||| || || ||||| | | | Sbjct 22087751 GGTGTGACGTACATGTTGAGAGCAATGGAGGCAAGGTTACACACCGCCACCTCGTCTTTG 22087810 Query 76311 CATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTT 76370 | ||| || | | | || ||||| || || || || ||||| || || ||||| | Sbjct 22087811 C--TGGTGTACTCAACAACTTCGGTGCACAGGTTGCTGCATTTGATGGTGCCCAGATTCT 22087868 Query 76371 GTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAA 76430 | ||||| ||||| ||||||||| || || || || | | || ||||| ||||| Sbjct 22087869 GCTGGTTACTCTTCCTGTTACATGCATCTTTGTACAGCATGTATGGCGTTCCCGTTTCTG 22087928 Query 76431 TCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTATCGC 76489 |||| || || ||||| | | ||||| | || ||| || | | | || | | Sbjct 22087929 TCTGGGACTCAATAATGGCATACCAGA-GCTGCTGAGCCTTCACCACACGCTTCACCCTC 22087987 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| ||||||||| || || | |||||| || || ||||| || |||| Sbjct 22087988 CCCTCGTTTTCATATTTAGTGTACAGTTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGC 22088047 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 |||||||| || || |||||||| | ||||| | | || || | ||||| Sbjct 22088048 CCAGGACACTCGTTGGGACACATTAGGGACCAGTTTTGGTTACTCTCCACTCTCTTCATG 22088107 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || ||||| || ||||| || ||| || || |||| || ||| | || || |||||| Sbjct 22088108 AACAGATCTGGAATCCACAGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTCCTTTCCT 22088167 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || ||||| || || || ||||| || | | |||| | |||||||| || || || || Sbjct 22088168 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTACATG 22088227 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | || |||| ||| || || |||||||| | ||| | ||||| || || ||| Sbjct 22088228 GCAAAGGCTCCAGGTCTTTTGTTCCCCCCCTGATCAACATAGCGAGCAGTATTGTTGTAA 22088287 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 ||||||||||| || | | ||||| || ||||||| || |||| || || || || Sbjct 22088288 ACTCTCAACATGGGCACCAGCCCGTTGGAGTTACCATTGGTACCAGCGATGTAGCTCCCG 22088347 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 || | ||| || | | | ||| || ||||| || ||| || || || ||| Sbjct 22088348 GTTGATCTGATACAGCTGACCGCCACGCCAATGCCTCCGGCGGATTTGGAAATGAGGGCA 22088407 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || | || | |||||||| ||||| || || || || || ||||| || || || Sbjct 22088408 CACTGCTTAAGAGTGTCATAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGGAGGAAG 22088467 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 ||||| |||| || | | |||||||| || || | || || || || || ||| Sbjct 22088468 CAGCTGGACAGCTGTGGCCGGTTGGTTCCTGCGTTGAAGAGGGTTGGTGAGGCGTGGGTG 22088527 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGA 77089 ||||| || || || || || ||||| || ||||| |||| || || || | | ||| Sbjct 22088528 AACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCATCGATGTCTCTCTCATGG 22088587 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATT 77149 || || |||| || | ||| | ||| ||||| || || || | || ||| || Sbjct 22088588 ATCCCAACAGACACCCTCATGAGCATGTGCTGCGGACGCTCGGCCACTTTTCCATTGATC 22088647 Query 77150 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 |||| || || || |||| ||||| || || || ||||||| || || ||||| Sbjct 22088648 TTCAGCAGATAGGAGCGCTCCAGGGTTTTGAAGCCGAAGAAGTTGTAAGAGAAATCTCTG 22088707 Query 77210 TCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAGT- 77268 |||||||| || ||||||| || ||| || | | |||||| | ||| || Sbjct 22088708 TCGTAAATTATGGCCGAATTGAGGCGGTCTTTGTTCTCCAGAACAATGT---TGAGCGTC 22088764 Query 77269 --GGTAGAAATAATTGGAGATCGTATTCCATTTT--TAGGATTAACATAGTTAAATAAGT 77324 | || || || || || || | | | || |||||| | ||||| | | || Sbjct 22088765 TCTTTTGAGATCATGGGGGA--GTGCTGCTTGTTCAGAGGATTGATGTAGTTGTACAGGT 22088822 Query 77325 CTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTC 77384 ||||||| || || ||||| | |||||| || || ||||| || || || || || || | Sbjct 22088823 CTTCCATCACTTCACTAAACACTTTTTTCGTCTCTTTGTGGAGGTTTGAGACAGCGATCC 22088882 Query 77385 TAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCC 77443 | || || ||||| |||||||| || |||| || || ||| ||||| || ||||| || Sbjct 22088883 TTGCGGCGAGAATGGCATAGTCGGGGTGTTTAGTTGT-CAGTGTGGCAGCAATTTCGGCT 22088941 Query 77444 GCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATG 77503 || | || || | || | ||| || || ||| | || | || || || || ||||| Sbjct 22088942 GCCAGCGTGTCAAGCTCCACAGTGGTGACACCGCTGTACAAACCCTGGATCACCTTCATT 22089001 Query 77504 GCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCT-AATACG 77562 | |||| ||||| || || || | || | ||| || || || |||| || || Sbjct 22089002 GTGATTTGAGCTGGATCCACGAAATCTGAATTTAGACCGTAGCA-AAGCTTCTGGATGCG 22089060 Query 77563 AGATGTGATTTTATCAAACATGAC 77586 ||| |||||||||||||||||||| Sbjct 22089061 AGAGGTGATTTTATCAAACATGAC 22089084 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| |||||||| | |||||| ||| | || || || || || || | Sbjct 22086857 TCCAACCGTAGAAGTGCATGCTGGATAGTTTTCCATAGTTTGGCTCTGCGATGTGGATGT 22086916 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| |||||| || || || ||| | || || | || || ||||| |||| | |||| Sbjct 22086917 TCAGCGACTGGCTCTGGTCTATGTAGGCACCACGGTCGGCAGCCATCTTTAATACAGTCT 22086976 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | |||||||||| |||||| | | || || | ||||||||||| Sbjct 22086977 TCTGGGAGATTTCCCAAACAGTTTTATACAGCTGCTTCAAATCATCTGGAA 22087027 >seq11 Length=48234189 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || |||| ||| || ||||| ||||| || || || ||||| || | || || || ||| Sbjct 16876971 CTGAATACTTTCTTGGTTTCTTTGTGCAGGTTGGACACGGCAATACGTGCTGCCAGGATT 16876912 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 |||||||||||||||| || ||| |||||| || | ||||| || || || || | | Sbjct 16876911 GCATAGTCAGGATGTTTAGTGGTGAGGGTGGCGGCCGTCTCTGCAGCCAAGGTGTCCAGT 16876852 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || ||| | || || || || || || ||||||| Sbjct 16876851 TCCACGGTGGTGACGCCGCTGTACAGACCCTGGATCACCTTCATGG 16876806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712881847823040