Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq11 114 3e-20 >seq11 Length=48234189 Score = 114 bits (126), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 37620549 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGGCCATCT 37620608 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| |||||||||||||| | | ||| |||||||| || Sbjct 37620609 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 37620668 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||| || |||| | | |||| ||| ||| || || || || || Sbjct 37620669 TGGATCTTGGCTTTCACGTTCTCGATGGTGTC---ACTTGGCTCAACCTCCAGGGTGATG 37620725 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| ||||| || |||| |||||| || Sbjct 37620726 GTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 37620763 Score = 113 bits (124), Expect = 1e-19 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || || |||||||| || | | || | |||||| Sbjct 21619908 AGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCT 21619967 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | ||| |||||||| || Sbjct 21619968 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 21620027 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||||| |||| | | |||| ||| ||| || || || || || Sbjct 21620028 TGGATCTTAGCTTTGACATTCTCAATGGTGTC---ACTTGGCTCGACCTCCAGGGTGATG 21620084 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || || || ||||| ||||| || |||| ||||||| |||| Sbjct 21620085 GTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCATTCCACCC 21620126 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || || |||||||| || | | || | |||||| Sbjct 37620321 AGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCT 37620380 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | ||| |||||||| || Sbjct 37620381 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 37620440 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||||| |||| | | |||| ||| ||| || || || || || Sbjct 37620441 TGGATCTTAGCTTTGACATTCTCAATGGTGTC---ACTTGGCTCGACCTCCAGGGTGATG 37620497 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| || |||| |||||| Sbjct 37620498 GTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 37620532 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || || |||||||| || | | || | |||||| Sbjct 21620136 AGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGGCCATCT 21620195 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | ||| |||||||| || Sbjct 21620196 TCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTGTCC 21620255 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||||||| |||| | | |||| ||| ||| || || || || || Sbjct 21620256 TGGATCTTAGCTTTGACATTCTCAATGGTGTC---ACTTGGCTCGACCTCCAGGGTGATG 21620312 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| || |||| |||||| Sbjct 21620313 GTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCAT 21620347 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 37619896 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCT 37619955 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || ||||| |||||||||||||| | | ||| |||||||| || Sbjct 37619956 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 37620015 Query 152013 TGAATTTT 152020 || || || Sbjct 37620016 TGGATCTT 37620023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153733622708887