Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq17 197 2e-45 seq11 140 5e-28 seq2 98.7 1e-15 >seq17 Length=38284538 Score = 197 bits (218), Expect = 2e-45 Identities = 230/310 (74%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACAC---CCCTTGACGTTGCTACAGACTAGAGAC 8335 ||||| || |||| | |||| ||||| |||| || ||| | ||||| || | Sbjct 12839117 TCGGGCACATGGAAGGACGCCACGGGACAGGGGCCCTGCACATTGTTGCAGACGAGCTTC 12839058 Query 8336 TGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTC 8395 || | | ||||| |||||||| |||| |||||| || || ||||||||||||||| Sbjct 12839057 TGCAGGGAGGCGCTGTTGACGATGTCGAAGCCCACGCTGCCTCCAAAGGTGCTGGGCTTC 12838998 Query 8396 CAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCC 8455 |||||| |||||||||||||| ||| |||| ||||||||||| ||||| ||||| ||| Sbjct 12838997 CAGTACTCCGGGGAGCAGATGGGATTCCCCATCAGGCCTTTGAGTGAGAAAGGAGCGCCC 12838938 Query 8456 AACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCG 8515 | ||| | || |||| ||||||||||||||||| ||||| || ||||||| | || Sbjct 12838937 ATCTCCACCATCGTCTCCCCGAAGATGGCGTTGGGTCGGGGTTTCTCCACCAGCAGACCA 12838878 Query 8516 GTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCC 8575 | ||| |||||||| || || || || ||||| | || || |||||| || || Sbjct 12838877 GGGTAGAGCTCCACGGCATCTACATCACCGTACATCTCCTCCAGCAAGGCAGCCATTTCT 12838818 Query 8576 TTTTCTCCTG 8585 ||||| |||| Sbjct 12838817 TTTTCGCCTG 12838808 Score = 150 bits (166), Expect = 3e-31 Identities = 134/168 (80%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| ||||||||| | ||||||||| ||| |||||| ||| ||||| || Sbjct 12837495 TCACCAATAAGGATGAGTCGGGAGGTCTGGAAGAGTCTTTCGTCATCCCAGTCTGGGTGG 12837436 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| || || || |||| ||||||||| | ||||||||| |||||||||||| Sbjct 12837435 ACTTCCTTCAGGACGTCACAAACCCGGTTGTGTTCACGGAGCCAGATGGTGGCGTACATC 12837376 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9399 ||||| ||||| ||||| || || ||||| || ||||| ||||| ||| Sbjct 12837375 ATGAGTCCAGGGACCAGACCGAAGGCCTCATGGCCGACGGCCAGGCGC 12837328 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 9674 GTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAAAACTGGTGCGTGAAATGTTGGCCA 9733 ||||| ||||| || | || ||||| |||| |||||||||||||| ||||| || Sbjct 12836958 GTGAAAGCCGGTCCGTTCTTCATATCAGATTTAAAGAACTGGTGCGTGAAGTGTTGTGCA 12836899 Query 9734 AAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCGGGAGTGAAGGTCCTCC-GAAGAAG 9792 || ||||||||||| ||| |||| ||||| || || ||| |||| | |||| | | | Sbjct 12836898 AAGAAGGCAAACATCAAGCTGGTACCCTGTGGGTCTGGAATGAACTTTCTCCTCACCAGG 12836839 Query 9793 AGTTTTT--TCCACAACGTGTGCCGCATCCGGCAGCTTTGTTTTACCTGG 9840 || || | | | ||| | | |||||||||||| | |||||||||| Sbjct 12836838 AGCTTCTCAGCTAAAACCT---TCACATCCGGCAGCTCTTTTTTACCTGG 12836792 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | ||| ||||| ||||| || || || || || || | || | Sbjct 12836514 TCACCTACGACTCCCATAGGGGTTGGGCAATCCTGCGGCACAGGTGGGAGGGCACGTGTG 12836455 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| || |||||| | |||||||| ||| || | || | || ||||| || Sbjct 12836454 TAGTAGGACAGGTTGGAGTAGGCTTCCCAACTTTTATAACCATAATGAGCATTGTAAGTG 12836395 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTG 10058 |||||||||||||||| | ||||| | ||| Sbjct 12836394 GGAGGGCTGTCAATCATGTGGGATCGAGCTG 12836364 >seq11 Length=48234189 Score = 140 bits (154), Expect = 5e-28 Identities = 186/257 (72%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 9235 CCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCT 9294 ||||| |||||||||| ||||| |||||||| ||||| || ||| |||||||||| Sbjct 116587 CCGATGATGATGAGTCTGGTGGTTTGGAACAGCTGCTCATCGTCCCACGTTGGATGTTCT 116528 Query 9295 TGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATG 9354 ||||| | ||||| || |||||||| ||||| | |||||| ||||||||||| || Sbjct 116527 GTCTTCAGGATGTCGCAGACTCTGTTGTGCTCCCTCAACCAGATGGTGGCGTACATGGTG 116468 Query 9355 AGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCA-- 9412 || || || | ||||| || |||| ||||||| ||||||||| | ||||| | Sbjct 116467 AGGCCCGGCAGGAGGCCGAACACCTCCTGACCGATGGCCAGACGCTGCTCATCGGGGAAG 116408 Query 9413 -CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 |||| ||| || | ||||||||| |||| || | || || ||||| ||| Sbjct 116407 CCTTC---AGGGTACACCATGTGCACAGGGACCTCAGAGGTTTTAGGAGGGTACATCTCA 116351 Query 9472 CCGTCAATCATCTGATA 9488 || || |||| ||| || Sbjct 116350 CCATCTATCACCTGTTA 116334 Score = 118 bits (130), Expect = 2e-21 Identities = 176/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 8301 ACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCC 8360 ||||||||| ||| |||| ||| || || | | ||||| | |||| ||| Sbjct 118357 ACGGACACCATTTGGTGTTGAGACACACCAGCTTCCTCAAAGTTGACGTTTTGATGATGT 118298 Query 8361 CGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGT 8420 ||| || || || || ||||||||||||||||||||| | |||||| |||| || Sbjct 118297 TGAAGCCTGTCTCGCCTCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGTTGATGGGGT 118238 Query 8421 TCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGA 8480 | | | |||||||| | |||||| ||||| |||| ||| | ||||||||||| || | Sbjct 118237 TTCCGAACAGGCCTTTCAAGGAGAAAGGAGCACCCATCTCCACCATGCTCTCACCAAAAA 118178 Query 8481 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 || | |||||| | || |||| || || || | || | ||||| ||| || | || Sbjct 118177 TGCAGCCGGGACGAGTTTTCTCCAGCAGGAGACCTGGATAAAACTCCAGAGCATCAATGT 118118 Query 8541 CTCCGTAAAG 8550 ||||||| || Sbjct 118117 CTCCGTAGAG 118108 >seq2 Length=88342039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/254 (69%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| |||||||| |||||||||||||| || |||||||| ||| || ||| Sbjct 62082819 TCACCGATGATGATGAGGCGAGTGGTCTGGAAAAGCTGCTCGTCGTCCCAGGTGGGGTGT 62082760 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||||| | || || |||| |||||| ||||||||||| | || || ||||| Sbjct 62082759 TCTGATTTCAGGATTTCACAGACCCGGTTGTGCTCCCTGAGCCACAGCGTAGCATACATT 62082700 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | || || | || || || |||| ||||| | |||| | | | | || Sbjct 62082699 CCCAATCCTGGAAGGAGTCCGAACACCTCCTGACCAATGGCCATCTGGTTCTGGACAGGG 62082640 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || || ||||| ||| |||| || | | || || |||||||| ||||| || Sbjct 62082639 ACGTCTGGAGGGTAGCTCATCCTGACGGGTGCATCAACCACAGAGGGGGGGTACATCTCT 62082580 Query 9472 CCGTCAATCATCTG 9485 || ||||| | ||| Sbjct 62082579 CCATCAATAACCTG 62082566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716823957218880