Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq11 141 2e-28 >seq11 Length=48234189 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || || || |||||||| ||||| || || || Sbjct 37620757 CAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTGGAGGTTGA--GCCAAGTG 37620700 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| ||| ||||| |||||||| ||||| |||||||| ||||||| Sbjct 37620699 ACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGC 37620640 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 37620639 AGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCAGACTACAACA 37620580 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || || || ||||| || | || ||| Sbjct 37620579 TCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTTAGA 37620539 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || || || || ||||||||||| || |||||||| ||||| | ||| | | Sbjct 21620116 CAGATCTTTGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCG--AGCCAAGTG 21620059 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| |||||| ||||| |||||||| ||||| ||||| || || |||| Sbjct 21620058 ACACCATTGAGAATGTCAAAGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGATCAGC 21619999 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 21619998 AGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCAGACTACAACA 21619939 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || || || || || || ||||| Sbjct 21619938 TTCAGAAGGAGTCCACCCTCCACCTTGT 21619911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203640251713018