Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nothobranchius_20furzeri_20[refseq_20GCF_5F001465895.1_202015-12-11] 5,897 sequences; 1,242,518,059 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq11 123 2e-23 >seq11 Length=48234189 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||||||||| ||||| ||||||||||| Sbjct 37620315 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGG 37620374 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||| | || ||| Sbjct 37620375 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCC 37620434 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| || | | ||||| || | ||| ||||||| || Sbjct 37620435 TTGTCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGT 37620493 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| || || ||||| || || ||||||||| Sbjct 37620494 GATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATG 37620533 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||| ||||| ||||| ||||||||||| Sbjct 37620543 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTGCGG 37620602 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || || ||||| | ||| ||||| | || | || ||| Sbjct 37620603 CCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 37620662 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| ||| | | ||||| || | ||| ||||||| || Sbjct 37620663 TTGTCC-TGGATCTTGGCTTTCACGTTCTCGATGGTGTCACTTGGCTCAACCTCCAGGGT 37620721 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| || || ||||| || || ||||||||||| Sbjct 37620722 GATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATGTT 37620763 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||||||||| ||||| ||||||||||| Sbjct 21620130 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGG 21620189 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||| | || ||| Sbjct 21620190 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCC 21620249 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| || | | ||||| || | ||| ||||||| || Sbjct 21620250 TTGTCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGT 21620308 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || ||||| || || ||||||||| Sbjct 21620309 GATGGTCTTTCCAGTAAGGGTCTTGACAAAGATCTGCATG 21620348 Score = 118 bits (130), Expect = 1e-21 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||||||||||||||| ||||| ||||||||||| Sbjct 21619902 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGG 21619961 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||| | || ||| Sbjct 21619962 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCC 21620021 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| || | | ||||| || | ||| ||||||| || Sbjct 21620022 TTGTCC-TGGATCTTAGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCCAGGGT 21620080 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| || || |||||||| Sbjct 21620081 GATGGTCTTTCCTGTGAGGGTCTTGACAAAGATCTGCAT 21620119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462269922416400