Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq10 123 2e-23 >seq10 Length=27519051 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 101759 TGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCC 101818 || ||||||||| | || | ||| |||||||| |||||||| || ||||| ||||| ||| Sbjct 14138125 TGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCAATGTTGAAAGGCACCCCTAATCCC 14138184 Query 101819 ATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGA 101878 ||||||||||| | || ||||| ||||| || |||| || || || ||||| || || Sbjct 14138185 ATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCACACATAGAACTGG 14138244 Query 101879 CTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACA 101926 | | | | || || || |||| | |||| |||||| ||||| |||| Sbjct 14138245 CAGAGTGCGTGGCAGGGGGGCAGCGCCATCCTAGGAAGGTCTGCAACA 14138292 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097 |||||||| || || ||||||||||| || |||||||||||||| || || || || ||| Sbjct 14138937 TATTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTCACCCTCCTCT 14138996 Query 102098 CTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGC 102157 || ||| || ||||| || || | || | ||| || || |||||||| || | | Sbjct 14138997 CTATCAGTGAACCCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATCCCAGATCTTC 14139056 Query 102158 ACGCCAGCTGCTGATAGCTCTTTG 102181 || || | |||||||||| ||| Sbjct 14139057 ACTCCTTTTTCTGATAGCTCCTTG 14139080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361239898143317