Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 432 4e-116 seq11 100 3e-16 seq21 87.8 2e-12 seq16 82.4 9e-11 >seq15 Length=39264731 Score = 432 bits (478), Expect = 4e-116 Identities = 1263/1942 (65%), Gaps = 19/1942 (1%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| |||||||| | ||||| || | || | || || || || || Sbjct 17054706 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCCGTCAGGTCTTTGAGCAGGTGGGGGTTG 17054765 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||| || || || | || | || ||||| || || || || || | || Sbjct 17054766 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 17054825 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 17054826 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17054885 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 17054886 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 17054945 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCT 53386 |||| || || ||||| || ||||| | ||| ||| Sbjct 17054946 TCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGAATGCCCTTACTCACCGGCGAGCCT 17055005 Query 53387 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 53446 |||| || || || | ||| || |||| || || || ||||| || || || | Sbjct 17055006 TCATACGTCTCATAGGTGCCTAGCTCGGCAGCCAGCTCGCAGCTCGCTTCCAAAGCGGCA 17055065 Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 || || || || || ||||||| | || || ||| || || |||| ||||| ||| Sbjct 17055066 TAGTAGATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGA 17055125 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 ||| | ||| || || || || || ||||| || || || || || || || || || Sbjct 17055126 TAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGG 17055185 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 | | | || || | |||||| | || || || || || || |||| || || Sbjct 17055186 CGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTC 17055245 Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATT--GTCCA 53683 | ||| ||||||||||||||| ||| | |||||| ||| ||| || | | || Sbjct 17055246 AAGTTCCTGACAATTACTTTGGTCACGTATGCCAGTTTTTTAAAGTCATAAGTCCGCTCA 17055305 Query 53684 TCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCA 53743 | || ||||||| | || ||||| |||||||| || || || ||||| | | Sbjct 17055306 GGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCGCCACCTCGTC--CT 17055363 Query 53744 TCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | | || |||| | || || |||||||| || || ||||||||||| || | || Sbjct 17055364 TGC---TAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGAT 17055420 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | || || || ||||| |||| || || || || || | ||| | ||||| ||||||| Sbjct 17055421 TCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCGTCCCAGTTT 17055480 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918 | |||| || || || || || | ||| | ||||||| | | | || | Sbjct 17055481 CTGTCTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCC 17055540 Query 53919 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 || || || || ||| || || | | ||||||||| || ||||| | |||| Sbjct 17055541 TCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCA 17055600 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 54038 ||| || || || | || ||||||| ||||| ||| ||| | || ||| || |||| Sbjct 17055601 GTCCGGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCA 17055660 Query 54039 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 54098 | ||||| ||||| ||||| || || || || || |||| || || ||||| |||| Sbjct 17055661 TGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTC 17055720 Query 54099 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 54158 | || ||||| || || || ||||| | | | |||| | ||||| || |||| ||| | Sbjct 17055721 CCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACA 17055780 Query 54159 TGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 54218 ||| | | || || | |||||| || |||||||| | || | || ||||| || | Sbjct 17055781 TGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATACCGTGCTGTGTTGTTGT 17055840 Query 54219 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 54278 | || ||||||||||| | || || ||||| || ||||| |||| || ||||| | Sbjct 17055841 ACACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGCCGGCAATGTAGCTCC 17055900 Query 54279 CACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 | ||| | || || | || | || ||||| || || ||| ||||| | | Sbjct 17055901 CCGTGGATCTGATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGG 17055960 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| | || | || || ||||| ||||| || || |||||| ||||| || || | Sbjct 17055961 CGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCCTTCATGGCGAGCAGGA 17056020 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | ||||| |||| || | | | ||||| ||||| || | ||| || || ||||| | Sbjct 17056021 AGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGG 17056080 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 | ||||| || || || || || ||||| |||||||| || | || |||||| | Sbjct 17056081 TGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGCTTCGATATCCGTCCCGT 17056140 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 | ||||| || || || | ||| | ||||||||| || | ||| | | ||| || | Sbjct 17056141 GGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTGA 17056200 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 | || |||| |||||| |||| ||| || || ||||| |||| || || || |||| Sbjct 17056201 TCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTATAGGAGAAATCTC 17056260 Query 54639 GTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 54698 || || || || | ||||| || || || | | ||| | || | || Sbjct 17056261 TGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTCGAGTGTGT 17056320 Query 54699 TACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTGACATAGTTAAATAAATC 54756 | |||| || || || || | | || | || |||| ||||| | | || Sbjct 17056321 CTTTCGAAACCATGGGGGA--GTGGCGTTTGTTCAGGGGGTTGATGTAGTTGTACAGGTC 17056378 Query 54757 CTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCT 54816 || ||| || || || || | || || || |||||||| || || || || || || | Sbjct 17056379 CTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTAGAGACAGCAATGCG 17056438 Query 54817 AGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGT 54876 ||||| || |||||||| || || | | || || |||||| || || || || | Sbjct 17056439 TGCGGCGAGTATGGCATAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATCTCCGCCGC 17056498 Query 54877 CAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGC 54936 ||| ||||| | || || || || || || | || | || ||||| |||||||| | Sbjct 17056499 CAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATGACCTTCATCGT 17056558 Query 54937 TATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAG 54995 || | | || || | | || |||| | ||||| || || |||| || |||| Sbjct 17056559 GATCTGAGCTGGGTCCACAAACTCCATGTTGAGTCCATAGCA-AAGCTTCTGGATGCGAG 17056617 Query 54996 ATGTGATTTTATCAAACATGAC 55017 |||||||||| || |||||||| Sbjct 17056618 ATGTGATTTTGTCGAACATGAC 17056639 >seq11 Length=32426571 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 ||||| ||||| ||||| || | |||||||| || | |||||| ||||||||||| || Sbjct 23758247 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTCCTG 23758188 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 || || || ||||| ||||| || |||| ||||||||||| |||| || || || || Sbjct 23758187 TTGCAGGCGTCCTTGTAAAGCATATATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 23758128 Query 53879 GCTTTCCA 53886 || | ||| Sbjct 23758127 GCATACCA 23758120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 23757120 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 23757061 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || ||||| || |||| || || || | || |||||| || |||| || | ||||| | Sbjct 23757060 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 23757001 Query 54545 ATGTGCTGAGGTC 54557 |||||||| |||| Sbjct 23757000 ATGTGCTGGGGTC 23756988 >seq21 Length=37011614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 ||||||| || ||||| | |||||||| | || || || ||||||||||| | ||| | Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| | || | |||||||| ||||| ||||| || ||||| || || ||||| | Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 18722733 Query 24277 C 24277 | Sbjct 18722732 C 18722732 >seq16 Length=36154882 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24631 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 24690 |||| || ||| |||||||||| |||||||||||||| || ||||| | ||||||||||| Sbjct 10882391 CCACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCAT 10882332 Query 24691 GATATTGAATTGGAAAAATAACAAA 24715 | |||| || || || || || || Sbjct 10882331 GGTATTTGATGGGGAAGATGACGAA 10882307 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 24631 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 24690 |||| || ||| |||||||||| |||||||||||||| || ||||| | ||||||||||| Sbjct 10898087 CCACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCAT 10898146 Query 24691 GATATTGAATTGGAAAAATAACAAA 24715 | |||| || || || || || || Sbjct 10898147 GGTATTTGATGGGGAAGATGACGAA 10898171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593702548958160