Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1437 149 6e-31 seq16 141 1e-28 seq21 104 2e-17 >seq1437 Length=1065406 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | | Sbjct 778869 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGC 778810 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || |||||||| ||| | ||||| Sbjct 778809 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCTGACCA 778751 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 778750 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 778691 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 778690 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 778642 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || || || | | | Sbjct 779097 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGC 779038 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || |||||||| ||| | ||||| Sbjct 779037 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCTGACCA 778979 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 778978 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 778919 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 778918 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 778870 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || || || | | Sbjct 778187 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 778128 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||||| | || || |||||||| ||| | ||||| Sbjct 778127 GACACCATTGAGAACG-TCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCCCCTGACCA 778069 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 778068 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 778009 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| || || || || |||| | ||||| || Sbjct 778008 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGG 777961 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| ||||| ||||| ||||||||| | || || || | Sbjct 779329 AAACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCC 779270 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||||| | | | | |||||| ||||| | ||||| || ||||| ||| | || Sbjct 779269 AAGCGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTGA 779210 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || | || |||| || ||||| |||||||| || | ||||||||| ||||| Sbjct 779209 CCAACAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 779150 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 779149 CAACATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 779098 Score = 141 bits (156), Expect = 1e-28 Identities = 171/229 (75%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| ||||| ||||||||| | || || || | | | Sbjct 778414 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGC 778355 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||| | | || || |||||||| ||| | ||||| Sbjct 778354 GACACCATTGAGAACG-TCAAGGCCAAA-TCCAGGATAAGGAGGGCATTCCCCCTGACCA 778297 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 778296 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 778237 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 778236 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 778188 Score = 141 bits (156), Expect = 1e-28 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | | Sbjct 778641 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGC 778582 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | || || |||||||| ||| | |||||| Sbjct 778581 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATTCCC-CTGACCAG 778523 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 778522 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 778463 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 778462 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 778415 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || ||||| ||||| ||||| ||||||||| | || || || | Sbjct 750020 AAACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCC 749961 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | |||||| ||||| | || || || ||||| ||| | || Sbjct 749960 AAGTGACACCATCGAGAATGTCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCTGA 749901 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || || | || ||||| |||||||| || | ||||||||| |||||| Sbjct 749900 CCAGCAGAGGCTGATATTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTA 749841 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 749840 CAACATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGTCTCAGGGGTGGC 749789 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | Sbjct 749561 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 749502 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | || || || ||||| ||| | |||||| Sbjct 749501 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 749442 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 749441 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 749382 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 749381 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 749334 Score = 132 bits (146), Expect = 5e-26 Identities = 167/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || || | | Sbjct 749788 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGT 749729 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||||| | || || || ||||| ||| | |||||| Sbjct 749728 GACACCATTGAGAATGTCAAGGCCAAAATCCAGGATAAGGAAGGCATTCCC-CTGACCAG 749670 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 749669 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 749610 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| || || || || |||| | ||||| ||| Sbjct 749609 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 749562 >seq16 Length=36154882 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || ||||| ||||| ||||||| |||||| |||||| Sbjct 10883071 GGAGAGCGCGTGGTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCC 10883130 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| |||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 10883131 GCCATCTTCTGGCTGAAGAAAAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 10883190 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 10883191 ATCAGCAGAGACGAGG 10883206 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || |||||| |||||||||| || ||||| ||||| ||||||| |||||| |||||| Sbjct 10897407 GGAGAGCGCGTGGTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCC 10897348 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| |||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 10897347 GCCATCTTCTGGCTGAAGAAAAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 10897288 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 10897287 ATCAGCAGAGACGAGG 10897272 Score = 123 bits (136), Expect = 3e-23 Identities = 102/122 (84%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| |||||||| | |||| ||| | |||||| | Sbjct 10882459 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAGGCCCTGAAGGACGAAGAGCGCTAC 10882517 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 10882518 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGTGACGGCATCGTCAACGAGAACCTG 10882577 Query 116804 GT 116805 || Sbjct 10882578 GT 10882579 Score = 123 bits (136), Expect = 3e-23 Identities = 102/122 (84%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| |||||||||||| | ||| |||||||| | |||| ||| | |||||| | Sbjct 10898019 AGGTGGATCTGTCCAAGGACCTGCAGC-ACTGGGAGGCCCTGAAGGACGAAGAGCGCTAC 10897961 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 10897960 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGTGACGGCATCGTCAACGAGAACCTG 10897901 Query 116804 GT 116805 || Sbjct 10897900 GT 10897899 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| ||||||||| | || || ||||| |||||||| || || Sbjct 10882660 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTGACGGAAGCCCGGTGTTTCTACGGTTTCCA 10882719 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||||||| Sbjct 10882720 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACGTAC 10882774 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| ||||| ||||||||| | || || ||||| |||||||| || || Sbjct 10897818 GGTGGAGCGCTTCATGCAGGAAGTGCAGGTGACGGAAGCCCGGTGTTTCTACGGTTTCCA 10897759 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||||||| Sbjct 10897758 GATCGCCATGGAGAACATCCACTCAGAGATGTA--CAGCCTGCTGATCGACACGTAC 10897704 >seq21 Length=37011614 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || ||||| || ||||||||| | ||||| || ||||| || || || |||| ||| Sbjct 18720530 GAACCTCTGCTCCGAGAGAACCCCAGGCGGTTTGTCATTTTTCCTATCCAGTACCGAGAC 18720589 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGG 116690 || ||| ||||||||| ||||| |||| || ||||||||||| |||||||||| Sbjct 18720590 ATCTGGAAGATGTACAAACAGGCCCAGGCCTCTTTCTGGACCGTGGAGGAGGTGG 18720644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515202667903920