Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 seq1437 95.1 1e-14 >seq15 Length=39264731 Score = 109 bits (120), Expect = 5e-19 Identities = 480/744 (65%), Gaps = 28/744 (4%) Strand=Plus/Plus Query 133222 GGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACG 133281 ||||||| | |||||||| || | ||| || || | | || | || ||| | | Sbjct 17054761 GGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGG 17054820 Query 133282 GTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCA 133341 |||| || ||||||||||| || ||||| || || | ||||||||||| |||| Sbjct 17054821 CCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCA 17054880 Query 133342 CCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCC 133401 || || ||| || ||||| | ||| || || || || |||||||||| Sbjct 17054881 GCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCC 17054940 Query 133402 ACAGATT-GTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATA 133460 |||| | |||||| | | | || | | | |||||| | | | ||| Sbjct 17054941 ACAGGTCCGTTGGAGTCTT---CTCC---CACAT-GTCGTACT---------GAAGAATG 17054984 Query 133461 CCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTG-GCCAGCTC 133519 ||| | |||||||| | | |||| ||||||| || | | | |||||||| Sbjct 17054985 CCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCC-TAGCTCGGCAGCCAGCTC 17055043 Query 133520 GCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-TGAATAGTTGACGAACC 133578 |||||| || |||||||||||| |||| || || || ||| || || ||||| | | Sbjct 17055044 GCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGAT-GTTGA-GCAGT 17055101 Query 133579 TG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTG 133636 || || ||| ||| || ||| ||| || | || | || || || ||||| ||||| Sbjct 17055102 TGAGCCTCGGGGCTTTCAAAGG-GATAACGCATGAGGATGAAGGCATCAGCCAATCCCTG 17055160 Query 133637 TATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATA 133696 | |||| || || || | || | || |||| | || || || || Sbjct 17055161 GACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTA 17055220 Query 133697 GTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAG 133756 || ||||| |||||| | |||||| | || | ||| || | ||| |||| | | ||| Sbjct 17055221 GTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGTATGCCAG 17055280 Query 133757 CAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGC 133816 | ||||| | ||| || | || |||| || |||||| || ||| ||| Sbjct 17055281 TTTTTTAAAGTCATAAGTCC--GCTCAGGGGT-GACGTACATGTTGAGAGCGATAGAGGC 17055337 Query 133817 TAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTT 133876 ||||| || || ||| ||||| || | |||| |||||| || | ||| ||||| Sbjct 17055338 CAGATTGCAGACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTT 17055397 Query 133877 GCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTA 133936 |||||| ||||||||||||| ||| | || ||||| | ||||| || ||||| Sbjct 17055398 GCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTA 17055457 Query 133937 TAGCATGTACGGCCCGCCGGTTTC 133960 | |||||||||| || ||||| Sbjct 17055458 GACCATGTACGGCGTCCCAGTTTC 17055481 >seq1437 Length=1065406 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| ||| || ||||| Sbjct 777984 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTG 778043 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | |||||| || || || ||||||||||| || ||||| Sbjct 778044 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTT 778103 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| | ||| ||||| | ||| | || ||||| || Sbjct 778104 GGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 778163 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||| Sbjct 778164 GAGGGTCTTCACAAAGATCTGCATG 778188 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| ||| || ||||| Sbjct 778894 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTG 778953 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | |||||| || || || ||||||||||| || ||||| Sbjct 778954 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTT 779013 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| | ||| ||||| | ||| | || ||||| || Sbjct 779014 GGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 779073 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||||||| Sbjct 779074 GAGGGTCTTCACAAAGATCTGCATG 779098 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| ||| || ||||| Sbjct 778212 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTG 778271 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTT 118653 || ||||| |||| || | |||||| || || || ||||||||||| | ||| | || Sbjct 778272 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGA--TT 778329 Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 | || || | || | |||||| | ||| ||||| | ||| | || ||||| | Sbjct 778330 TGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAG 778389 Query 118714 TCAGAGTTTTTACAAAAATCTGCATG 118739 | || || || ||||| ||||||||| Sbjct 778390 TGAGGGTCTTCACAAAGATCTGCATG 778415 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 778666 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 778725 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | |||||| || || || ||||||||||| || ||||| Sbjct 778726 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTT 778785 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| | ||| ||||| | ||| | || ||||| || Sbjct 778786 GGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 778845 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 778846 GAGGGTCTTCACGAAGATCTGCATG 778870 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/205 (69%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 778439 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 778498 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || ||||| |||| || | |||||| || || || ||||||||||| || ||||| Sbjct 778499 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCCTCCTTATCCTGGATTTT 778557 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| | ||| ||||| | ||| | || ||||| || Sbjct 778558 GGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 778617 Query 118715 CAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||| Sbjct 778618 GAGGGTCTTCACGAAGATCTGCATG 778642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433816827480364