Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 6e-15 seq12 93.3 8e-14 >seq16 Length=36154882 Score = 96.9 bits (106), Expect = 6e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 ||||||| ||| | |||| |||||| || |||||||| | || | | |||| || || Sbjct 32713287 GATAGCCTCAGCTCTTTGGTGGTACTACATCTCCAAAGGAGTGGAGTTCCTGGACACTGT 32713346 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 ||||||||||| ||||| || || || || || || || || ||||| || ||||| | Sbjct 32713347 CTTTTTCATACTGAGGAAGAAGTTCAACCAAGTCAGCTTCCTCCACGTCTACCATCACTG 32713406 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 || ||||| | || | ||||| || || |||||| || | || || || Sbjct 32713407 CACCATGTTCATCCTCTGGTGGATTGGAATCAAATGGGTTCCCGGTGGGCA 32713457 >seq12 Length=36466354 Score = 93.3 bits (102), Expect = 8e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 51893 GAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCA 51952 |||| | |||| ||| | || ||||| || || || || |||| || || ||||||| Sbjct 16128610 GAGCTCTGTGGTGGTATTTCATCTCCAAGGGCATTGAGTATCTGGACACTGTGTTTTTCA 16128551 Query 51953 TACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGT 52012 | || ||||||||||| || ||||| | || || ||||| || ||||||| | |||| Sbjct 16128550 TCCTGAGGAAAAAATTCAACCAGGTCACCTTCCTGCACGTCTACCATCATTGCTCCATGT 16128491 Query 52013 TTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCAG 52056 | || || | ||||| || || || ||| | || ||||| ||| Sbjct 16128490 TCACGCTCTGGTGGATTGGCATCAAGTGGGTGGCAGGAGGACAG 16128447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923167176922680