Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1437 109 4e-19 >seq1437 Length=1065406 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || |||| ||||||||| || || Sbjct 749826 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAT 749885 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| ||| | || ||||| || || ||||| ||| | || Sbjct 749886 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC--CTGGATTTTGGCCTTGACAT 749943 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| ||||| ||||||| Sbjct 749944 TCTCGATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCA 750003 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 750004 CAAAGATCTGCAT 750016 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || |||| ||||||||| || || Sbjct 778907 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 778966 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| ||| | || |||||| || || ||||| ||| | | Sbjct 778967 ATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATC--CTGGATTTTGGCCTTGACGT 779024 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 779025 TCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 779084 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 779085 CAAAGATCTGCAT 779097 Score = 109 bits (120), Expect = 4e-19 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 779135 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 779194 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||| ||||| ||| | || |||||||| || ||||| ||| | || Sbjct 779195 ATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTC--CTGGATTTTGGCCTTGACAT 779252 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| |||||||| ||||| ||||| ||||||| Sbjct 779253 TCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCA 779312 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 779313 CAAAGATCTGCAT 779325 Score = 105 bits (116), Expect = 4e-18 Identities = 140/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || |||| ||||||||| || || Sbjct 778225 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 778284 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG-CTTTAGATC 34317 || |||| ||||||||| ||| | || |||||| || || ||| | ||| | | Sbjct 778285 ATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATC--CTGGATTTGGCCTTGACGTT 778342 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | ||| | | || || |||| |||||||| ||||| ||||| || ||||| Sbjct 778343 CTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 778402 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 778403 AAAGATCTGCAT 778414 Score = 105 bits (116), Expect = 4e-18 Identities = 141/193 (73%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 778452 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 778511 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| | ||| | || |||||| || || ||||| ||| | || Sbjct 778512 ATCAGCCTCTGCTGGTC-AGGGGAATGCCCTCCTTATC--CTGGATTTTGGCCTTGACAT 778568 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 778569 TCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 778628 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 778629 CGAAGATCTGCAT 778641 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| | || |||| ||||||||| || || Sbjct 777997 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 778056 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| ||| | || |||||| || || ||||| ||| | | Sbjct 778057 ATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATC--CTGGATTTTGGCCTTGACGT 778114 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 778115 TCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 778174 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 778175 CAAAGATCTGCAT 778187 Score = 100 bits (110), Expect = 2e-16 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 778679 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 778738 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| ||| | || |||||| || || ||||| ||| | | Sbjct 778739 ATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATC--CTGGATTTTGGCCTTGACGT 778796 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | ||| | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 778797 TCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 778856 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 778857 CGAAGATCTGCAT 778869 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 749599 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 749658 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| | ||| | || ||||| || || ||||| ||| | || Sbjct 749659 ATCAGCCTCTGCTGGTC-AGGGGAATGCCTTCCTTATC--CTGGATTTTGGCCTTGACAT 749715 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 749716 TCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 749775 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 749776 CGAAGATCTGCAT 749788 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 749371 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 749430 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGAT 34316 || |||| ||||||||| ||| | || ||||| || || ||||| ||| | || Sbjct 749431 ATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC--CTGGATTTTGGCCTTGACAT 749488 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| ||||| || |||| Sbjct 749489 TCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 749548 Query 34377 CAAAGATCTGCAT 34389 | ||||||||||| Sbjct 749549 CGAAGATCTGCAT 749561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323061892591520