Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq8 297 1e-75 seq13 96.9 2e-15 >seq8 Length=62059223 Score = 297 bits (328), Expect = 1e-75 Identities = 467/659 (71%), Gaps = 10/659 (2%) Strand=Plus/Minus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| |||||||| || ||| | |||||| ||| ||||||||||| ||||| ||||| Sbjct 44861593 TTCATCACAGTTCCT-CTCAGTGATGAAGAGAAAGATTTCCCCATTGCATACTCCATGGT 44861535 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | ||||||| |||||||| | ||||| ||||| || ||||| || ||||| |||||||| Sbjct 44861534 GATCCATGACAAGATTGAGATGTTTGAGCGGCTTCTACGAGCTGTTTATGCTCCTCAGAA 44861475 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||| |||||||| |||||||| ||| ||| | | || ||||| |||| || || Sbjct 44861474 CATCTACTGTGTACACGTGGACCAGAAATCCTCTGCAACATTCAAGAAGGCTGTGGGTGC 44861415 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 ||| ||| ||||| |||||||| || | |||||||| || || ||||| ||||| Sbjct 44861414 GATTGCTTCATGCTTTCCCAATGTGTTTGTAGCCAGTAAATTAGTAAGAGTGGTATATGC 44861355 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 ||| |||| |||||| || || || ||||| || |||||||| |||| | | |||| Sbjct 44861354 CTCGTGGTTCAGAGTACAGGCAGATCTGAATTGCATGGAAGATCTGCTAAATA-CTCACA 44861296 Query 107975 GCCA-TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 | | |||| |||| | || || || || ||||||||||||||||| || || || | Sbjct 44861295 TCAACTGGAGGTACCTGCTTAACACCTGTGGGACAGACTTCCCCATCAAAACAAACAGAG 44861236 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||| ||| || ||| | | || || | |||||| ||||||||||| | ||| Sbjct 44861235 AGATGGTGAGGGCACTGAAGTTTCTCAATGGGAGGAACAGCATGGAGTCTGAAGCGACTT 44861176 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTA 108153 ||| ||||| ||| ||| ||| | || | | | | | ||| ||| | || | | Sbjct 44861175 CTGGCTCCAAGAAACGTCGTTGGCAGTATCACCACAATATCACAAACAGTGT-TATC--A 44861119 Query 108154 CCAGCAAGATGAAGGACCCT--CCCCCTGAT-AATTTACCCATGTTCACAGGGAATGCCT 108210 || || ||| | | | ||| | || | | ||||||||| |||| ||||||| Sbjct 44861118 ACACAAATGTGAGGAAAGGTGACCCACCAATCAGCATCCCCATGTTCTCAGGAAATGCCT 44861059 Query 108211 ATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC 108270 | ||||||| | | |||| ||||| ||||||| | | || | | || | Sbjct 44861058 ACTTTGTGGTCACAAGAGCTTTTGTGGAACATGTGATGAAGGACAGTGAGGTTCAGAAGT 44860999 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAG 108329 | | || |||| || ||||| || ||||| || || ||| | ||||||||||| ||| Sbjct 44860998 TTCTGGAGTGGGAGAAGGACACATACAGCCCTGATGAGCACTTGTGGGCCACCCTACAG 44860940 Score = 264 bits (292), Expect = 8e-66 Identities = 461/664 (69%), Gaps = 20/664 (3%) Strand=Plus/Minus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| |||||||| || ||| | |||||| ||| ||||||||||| ||||| ||||| Sbjct 44868598 TTCATCACAGTTCCT-CTCAGTGAGGAAGAGAAAGATTTCCCCATTGCATACTCCATGGT 44868540 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | ||||||| |||||||| | ||||| ||||| || ||||| || ||||| |||||||| Sbjct 44868539 GATCCATGACAAGATTGAGATGTTTGAGCGGCTTCTACGAGCTGTTTATGCTCCTCAGAA 44868480 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||| |||||||| |||||||| ||| ||| | | || ||||| |||| || || Sbjct 44868479 CATCTACTGTGTACACGTGGACCAGAAATCCTCTGCAACATTCAAGAAGGCTGTGGCTGC 44868420 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 ||| ||| ||||| |||||||| || | |||||||| || | ||||| ||||| Sbjct 44868419 GATTGCTTCATGCTTTCCCAATGTGTTTGTAGCCAGTAAATTAGAAAGAGTGGTATATGC 44868360 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 ||| |||| |||||| || || || ||||| || ||| |||| |||| | | |||| Sbjct 44868359 CTCGTGGTTCAGAGTACAGGCAGATCTGAATTGCATGAAAGATCTGCTAAATA-CTCACA 44868301 Query 107975 GCCA-TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 | | |||| |||| | || || || || ||||||||||||||||| || || || | Sbjct 44868300 TCAACTGGAGGTACCTGCTTAACACCTGTGGGACAGACTTCCCCATCAAAACAAACAGAG 44868241 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||| ||| || ||| | | || || | |||||| ||||||||||| | || Sbjct 44868240 AGATGGTGAGGGCACTGAAGTTTCTCAATGGGAGGAACAGCATGGAGTCTGAAGCCACTC 44868181 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTA 108153 || ||| ||| ||| ||| | || | | | || || ||| | | || Sbjct 44868180 CTACACGCAAGAAAGGTCGTTGGCAGTATCATCACAAAGTCACCAACAAAGT------TA 44868127 Query 108154 CCAGCA-AGATG-------AAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAA 108205 | ||| | ||| ||| ||| || | | | | ||||||||| |||| || Sbjct 44868126 TCGGCACATATGTCTGGAAAAGTGCCCCACCAATCAGCA--TCCCCATGTTCTCAGGAAA 44868069 Query 108206 TGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCA 108265 |||||| ||||||| | | |||| ||||| ||||||| | | || | | || Sbjct 44868068 TGCCTACTTTGTGGTCACAAGAGCTTTTGTGGAACATGTGATGAAGGACAGTGAGGTTCA 44868009 Query 108266 AAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT 108325 | | | || |||| || ||||| || ||||| || || ||| | ||||||||||| Sbjct 44868008 GAAGTTTCTGGAGTGGGAGAAGGACACATACAGCCCTGATGAGCACTTGTGGGCCACCCT 44867949 Query 108326 TCAG 108329 ||| Sbjct 44867948 ACAG 44867945 Score = 259 bits (286), Expect = 3e-64 Identities = 463/665 (70%), Gaps = 22/665 (3%) Strand=Plus/Minus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| |||||||| || ||| | |||||| ||| ||||||||||| ||||| ||||| Sbjct 44863872 TTCATCACAGTTCCT-CTCAGTGATGAAGAGAAAGATTTCCCCATTGCATACTCCATGGT 44863814 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | |||||||||| ||||| | ||||| ||||| || ||||| || ||||| |||||||| Sbjct 44863813 GATCCATGAGAAAATTGAGATGTTTGAGCGGCTTCTACGAGCTGTTTATGCTCCTCAGAA 44863754 Query 107795 CATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGC 107854 ||| |||||||| |||||||| ||| ||| | | || |||| | || || || Sbjct 44863753 CATCTACTGTGTACACGTGGACAAGAAATCCTCTGCAACATTCAGGCACGCTGTGGCTGC 44863694 Query 107855 CATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGC 107914 ||| ||| ||||| |||||||| || | |||||||| || | ||||| ||||| Sbjct 44863693 GATTGCTTCATGCTTTCCCAATGTGTTTGTAGCCAGTAAATTAGAAAGAGTGGTATATGC 44863634 Query 107915 CTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGT 107974 ||| |||| |||||| || || || ||||| || ||| |||| |||| | | |||| Sbjct 44863633 CTCGTGGTTCAGAGTACAGGCAGATCTGAATTGCATGAAAGATCTGCTAAATA-CTCACA 44863575 Query 107975 GCCA-TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 | | |||| |||| | || || || || ||||||||||||||||| || || || | Sbjct 44863574 TCAACTGGAGGTACCTGCTTAACACCTGTGGGACAGACTTCCCCATCAAAACAAACAGAG 44863515 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||| ||| || ||| | | || || | |||||| ||||||||||| | || Sbjct 44863514 AGATGGTGAGGGCACTGAAGTTTCTCAATGGGAGGAACAGCATGGAGTCTGAAGCCACTC 44863455 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTA 108153 ||| ||| ||| ||| ||| | || | | | | || | ||| ||| || Sbjct 44863454 CTGGACACAAGAAACGTCGTTGGCAGTATCATCACAA--TATCACAAACAGTGT----TA 44863401 Query 108154 CCAGCA-AGATG------AAG--GACCCTCCCCCTGATAATTTACCCATGTTCACAGGGA 108204 || || | ||| ||| ||||| || | | | | ||||||||| |||| | Sbjct 44863400 TCAACACAAATGTCTGGAAAGGTGACCC-ACCAATCAGCA--TCCCCATGTTCTCAGGAA 44863344 Query 108205 ATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCC 108264 ||||||| ||||||| | | |||| ||||| ||||||| | | || | | | Sbjct 44863343 ATGCCTACTTTGTGGTCACAAGAGCTTTTGTGGAACATGTGATGAAGGACAGTGAGGTTC 44863284 Query 108265 AAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCC 108324 | | | | || |||| || ||||| || ||||| || || ||| | |||||||||| Sbjct 44863283 AGAAGTTTCTGGAGTGGGAGAAGGACACATACAGCCCTGATGAGCACTTGTGGGCCACCC 44863224 Query 108325 TTCAG 108329 | ||| Sbjct 44863223 TACAG 44863219 Score = 140 bits (154), Expect = 2e-28 Identities = 117/141 (83%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 107676 TTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGT 107734 ||||| |||||||| || ||| | |||||| ||| ||||||||||| ||||| ||||| Sbjct 44866161 TTCATCACAGTTCCT-CTCAGTGAGGAAGAGAAAGATTTCCCCATTGCATACTCCATGGT 44866103 Query 107735 GGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAA 107794 | ||||||| |||||||| | ||||| ||||| || ||||| || ||||| |||||||| Sbjct 44866102 GATCCATGACAAGATTGAGATGTTTGAGCGGCTTCTACGAGCTGTTTATGCTCCTCAGAA 44866043 Query 107795 CATATACTGTGTCCACGTGGA 107815 ||| |||||||| |||||||| Sbjct 44866042 CATCTACTGTGTACACGTGGA 44866022 >seq13 Length=41232431 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 107754 AACTTTGAACGG-CTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 107812 ||||||||| || || |||||||| | || || ||||| || || || ||||||||||| Sbjct 22028591 AACTTTGAAGGGACTACTGCGAGCTATCTACGCACCTCAAAATATTTATTGTGTCCACGT 22028650 Query 107813 GGATGTGAAGTCCCCAG----AGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCT 107868 ||| || || |||| || |||| || |||| ||||||| |||||| | Sbjct 22028651 GGACAAAAAATCACCAGCCTCAGTCTTT----ATTGCCATCAATGCCATTACTTCCTGTT 22028706 Query 107869 TCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAG 107928 |||| ||||| ||||||| ||| ||| || ||||| ||||| ||| | | | Sbjct 22028707 TCCCAAATGTGTTCATGGGCAGCAAGGCTGTGAATGTGGTCTATGCTGGATGGACATGTG 22028766 Query 107929 TGCAAGCTGACCTGAACTGTATGG 107952 | || ||||| || |||||||||| Sbjct 22028767 TACAGGCTGATCTTAACTGTATGG 22028790 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 9/204 (4%) Strand=Plus/Plus Query 107754 AACTTTGAACGG-CTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 107812 ||||||||| || || |||||||| | || || ||||| || || || ||||||||||| Sbjct 22058598 AACTTTGAAGGGACTACTGCGAGCTATCTACGCACCTCAAAATATTTATTGTGTCCACGT 22058657 Query 107813 GGATGTGAAGTCCCCAG----AGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCT 107868 ||| || || |||| || |||| || |||| ||||||| |||||| | Sbjct 22058658 GGACAAAAAATCACCAGCCTCAGTCTTT----ATTGCCATCAATGCCATTACTTCCTGTT 22058713 Query 107869 TCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAG 107928 |||| ||||| ||||||| ||| ||| || ||||| ||||| ||| | | | Sbjct 22058714 TCCCAAATGTGTTCATGGGCAGCAAGGCTGTGAATGTGGTCTATGCTGGATGGACATGTG 22058773 Query 107929 TGCAAGCTGACCTGAACTGTATGG 107952 | || ||||| || |||||||||| Sbjct 22058774 TACAGGCTGATCTTAACTGTATGG 22058797 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/201 (70%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 |||||| || || |||||||| | ||||| ||||| || || || |||||||| ||||| Sbjct 21943351 CTTTGAGCGACTACTGCGAGCTATCTATGCACCTCAAAATATTTATTGTGTCCATGTGGA 21943410 Query 107816 TGTGAAGTCCCCAG----AGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCC 107871 || || || | || |||| | || |||||||||||| |||||| |||| Sbjct 21943411 CAAAAAATCACCGGCCTCAGTCTTT----GCTGCCATCAAGGCCATTACTTCCTGTTTCC 21943466 Query 107872 CCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGC 107931 | ||||| ||||||| ||| ||| || ||||| || || ||| | | || | Sbjct 21943467 CAAATGTGTTCATGGTCAGCAAGGCTGTGAATGTGGTCTACGCTGGATGGACACGTGTAC 21943526 Query 107932 AAGCTGACCTGAACTGTATGG 107952 | |||| || ||||| |||| Sbjct 21943527 AGCCTGATCTTAACTGCATGG 21943547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348257904301758