Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1437 87.8 1e-12 >seq1437 Length=1065406 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || || || || || ||||||||||||| | || | |||| Sbjct 749805 AGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 749864 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| | || || || || || || ||| | |||||||||||| Sbjct 749865 TCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 749924 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | | | ||||||| ||||| || | ||||||| | Sbjct 749925 TGGATTTTGGCCTTGACATTCTCGATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTC 749984 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||||| || | ||||| ||||| || ||||| ||| Sbjct 749985 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTTT 750020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || || || || ||||||||||| | | || | |||| Sbjct 779114 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 779173 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || ||||| || ||| | ||||||||| || Sbjct 779174 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCC 779233 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| |||||| | ||| ||||| | ||||| || | ||||||| | Sbjct 779234 TGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTC 779293 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCTTATAAA 18342 ||||| || | ||||| ||||| || ||||| ||| || |||||| Sbjct 779294 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTTTGCACCTATATAAA 779342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379332132104415