Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15 446 1e-120 seq11 123 2e-23 seq1437 91.5 1e-13 seq16 86.0 6e-12 >seq15 Length=39264731 Score = 446 bits (494), Expect = 1e-120 Identities = 1061/1595 (67%), Gaps = 41/1595 (3%) Strand=Plus/Plus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 || ||||||| || | | |||| ||||||| ||| || |||| || | |||||| Sbjct 17054718 TCATTCCACAGGCCCCTCTCCGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAAC 17054777 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || || || | || ||||| ||| |||||| |||| | | |||| || || ||| Sbjct 17054778 TCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTG 17054837 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || |||||||| |||| ||| || ||| ||| Sbjct 17054838 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTC 17054897 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | ||| || || | || || ||| |||| | |||||||||||| || | || ||| Sbjct 17054898 ACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGAGTC 17054957 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| || | | ||| |||| |||| |||||| ||||| Sbjct 17054958 ---TTCTCCCACATGTCGTACTGAAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTC 17055014 Query 22709 TCGTACGGACCATATATC-GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 || || || | || || || || || ||||||||||| ||||| ||| | || || || Sbjct 17055015 TCATA-GGTGCCTAGCTCGGCAGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAGTAGAT 17055073 Query 22768 AGTCTCGAAGATTT---TCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACG 22824 ||||| ||||| | | ||| || || || ||| |||||| | || ||| Sbjct 17055074 TGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGG---GGCTTTCAAAGGGATAACG 17055130 Query 22825 CATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAG 22884 ||| | | ||| || || |||| ||||| || || || || ||||| | || || Sbjct 17055131 CATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCAT 17055190 Query 22885 ATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTT 22944 |||||| | || || || || || | || ||||| |||||||||| Sbjct 17055191 GTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTT 17055250 Query 22945 TCTGGTCACAAT---TTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT-- 22999 ||| ||||| ||| || | | |||||| ||| | ||| | Sbjct 17055251 CCTG---ACAATTACTTTGGTCACGTATGCCAGTTTTTTAAAGTCATAA--GTCCGCTCA 17055305 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 | || || |||||| ||||| ||||| |||||||| || ||||||||||| ||| Sbjct 17055306 GGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCGCCACCTCGTCCTTG 17055365 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 |||||||| || ||||| || || || ||||| ||||| || ||||||| ||| | Sbjct 17055366 CTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGC 17055425 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 |||||||| || | ||||| | || ||||||| |||||||||||| || || || | Sbjct 17055426 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCGTCCCAGTTTCTGTC 17055485 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT---GAACACGTCGCACGTACCTG 23236 |||||||||||||| || ||| | |||||| | ||||| ||| ||| Sbjct 17055486 TGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCAC---CCTC 17055542 Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 || || ||| || | ||| | | ||||| || | || | || || |||| Sbjct 17055543 CCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGT 17055602 Query 23297 CCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 ||||| | | || ||||| || ||| | || || || || || |||| Sbjct 17055603 CCGGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATG 17055662 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 || || || || ||||| || ||||||||||| || | ||| ||| |||||| || || Sbjct 17055663 AAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCC 17055722 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 |||||||| |||| |||| ||||| ||||| || ||||| ||||| ||||| | | Sbjct 17055723 GTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATG 17055782 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 || || ||||| ||||| || ||||| |||||||| || || || || |||||||||||| Sbjct 17055783 GCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATACCGTGCTGTGTTGTTGTAC 17055842 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAA 23593 || || | ||| || || || |||||||| |||| ||| || | ||| Sbjct 17055843 ACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGCCGGCAATGTAGCTC--- 17055899 Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 || | | || | | | || | || || |||||| | ||||| || || | Sbjct 17055900 CCCGTGGATCTGATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGG 17055959 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAG 23713 ||||| || ||||| ||||||||||| ||||| |||||||| || || | |||| || | Sbjct 17055960 GCGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCCTTCATGGCGAGCAGG 17056019 Query 23714 AAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGC 23773 || || |||| |||| || || | || ||| || |||||| |||||| Sbjct 17056020 AAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGG 17056079 Query 23774 GTAAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTC 23829 || || ||| ||| |||| || ||||| || |||||||| || || || ||| Sbjct 17056080 GTGAA----CCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGCTTCGATATCCGT 17056135 Query 23830 TCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCC 23889 ||||| || || | || || | ||| | ||||| || || | ||| | ||| Sbjct 17056136 CCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCC 17056195 Query 23890 GTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAA 23949 || || || | ||| || || || | || || || || ||||| ||| |||| || Sbjct 17056196 ATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTATAGGAGAA 17056255 Query 23950 GTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 || | || | | ||||||||| || | |||| Sbjct 17056256 ATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGT 17056290 >seq11 Length=32426571 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || |||||||||| || || ||||| | ||| |||| || || || || | Sbjct 23757793 TTTCCACTCGCTTCATAAAAAGGTCTGGGATCCACAAGGCGAAGAAGAGGTCCCGCGCCC 23757734 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||| ||||| || |||||||| ||||| |||||||| || ||||| || ||||| Sbjct 23757733 TCTGCTCTTCTTTACCCGTGTTCTTCTTCAACTCCAAAAACTCGAACACATCAAAATGCC 23757674 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||||||||| || |||||||| || || |||| Sbjct 23757673 ACGGCTCGAGGTACACAGCAAACGCCCCAGGCCTCT 23757638 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| |||||| ||||||||||| || || || || |||||||| | || || || Sbjct 23758275 CACCTCATCTTTGCTTGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGT 23758216 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||| || || || | ||||| | |||||||| ||||| || || || Sbjct 23758215 GCCCAGATTTTGCTGATTACTCTTCCTGTTGCAGGCGTCCTTGTAAAGCATATATGGTGT 23758156 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || || || ||||||||| ||||| || ||||| Sbjct 23758155 ACCAGTTTCTGTCTGCGACTCAATGATGGCATACCACA 23758118 >seq1437 Length=1065406 Score = 91.5 bits (100), Expect = 1e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 |||||||||| || || || || || || || ||||| || |||||| | || ||||| | Sbjct 779330 CAAACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGC 779271 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 | ||||| | || | ||||| | ||| ||||||||||||| | || || | Sbjct 779270 CAAGCGACACCATTGAGAATGTCAAGGCCAAAATCCAGGACAAGGAAGGCATTCCCCCTG 779211 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||| ||| | || || || |||||||| ||| ||||||| Sbjct 779210 ACCAACAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGA 779171 >seq16 Length=36154882 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || |||||||| || || || ||||| |||||| || || || || || ||| || Sbjct 10883086 GCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCTGGCTG 10883145 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 |||||| | |||||||||||||||||||| || ||||||| Sbjct 10883146 AAGAAAAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAG 10883187 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 57981 GCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATG 58040 || || |||||||| || || || ||||| |||||| || || || || || ||| || Sbjct 10897392 GCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCTGGCTG 10897333 Query 58041 AAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAG 58082 |||||| | |||||||||||||||||||| || ||||||| Sbjct 10897332 AAGAAAAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAG 10897291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445752096470640