Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq15 98.7 2e-15 >seq15 Length=39264731 Score = 98.7 bits (108), Expect = 2e-15 Identities = 171/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 ||||| || | |||||||||| || | ||| || || || || || ||||||||| Sbjct 17055936 CCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATG 17055995 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTTCCACAA 94911 || ||||| | | | | || |||||||| ||| || || || || |||||| | Sbjct 17055996 CTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCA 17056055 Query 94912 TTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTCA 94971 || || || || ||||| || ||||| || | | | |||| || | || || || Sbjct 17056056 TTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCG 17056115 Query 94972 ATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTGA 95031 ||| | | || ||| || | ||||| || || |||||||| | ||| | ||||| ||| Sbjct 17056116 ATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGC 17056175 Query 95032 GGGCGCTCA 95040 || |||||| Sbjct 17056176 GGACGCTCA 17056184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989551452891485