Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq15 425 7e-114 seq11 96.9 4e-15 seq16 91.5 2e-13 seq21 84.2 3e-11 >seq15 Length=39264731 Score = 425 bits (470), Expect = 7e-114 Identities = 1268/1950 (65%), Gaps = 35/1950 (2%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| |||||||| | ||||| || | || | || || || ||||| Sbjct 17054706 TTCTTCATCTCCTCATTCCACAGGCCCCTCTCCGTCAGGTCTTTGAGCAGGTGGGGGTTG 17054765 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || || || || | || | || ||||| || || || || || | || Sbjct 17054766 ACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTTGTGTAGGCCTCG 17054825 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 17054826 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 17054885 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | || | | | ||| || || || || | | ||| | ||| || Sbjct 17054886 AGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 17054945 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 |||| || | | ||| || || ||||| || ||||| | Sbjct 17054946 TCCGTTGGAGTCTTCTCCCACATGTCG-------TACTGAAGAATGCCCTTACTCACCGG 17054998 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 ||| ||| |||| || ||||| | ||| || |||| || | || ||||| || || Sbjct 17054999 CGAGCCTTCATACGTCTCATAGGTGCCTAGCTCGGCAGCCAGCTCGCAGCTCGCTTCCAA 17055058 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 || | || || || || |||||||||| | || || ||| || || ||||| || Sbjct 17055059 AGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGGGCTTTC 17055118 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||| |||||| | ||| || || || || || ||||| || || || || || || || Sbjct 17055119 AAAGGGATAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGG 17055178 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | | | || || | |||||| | || || || || || || |||| Sbjct 17055179 CCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAAC 17055238 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-- 62915 || || | || ||||||||||||||| ||| | |||||| ||| ||| | Sbjct 17055239 CTTGTTCAAGTTCCTGACAATTACTTTGGTCACGTATGCCAGTTTTTTAAAGTCATAAGT 17055298 Query 62916 -CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974 ||| || | || ||||||| | || | ||| |||||||| || || || ||||| Sbjct 17055299 CCGCTCAGGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCGCCACCTC 17055358 Query 62975 ATTAGCATCCGCATATTGTATT-----ATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 | | | | || |||| | || || |||||||| || || |||||||| || Sbjct 17055359 GTC--CTTGC---TAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTG 17055413 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTA 63089 || | ||| || || || ||||| |||| || || || || || | ||| | || || Sbjct 17055414 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCGTC 17055473 Query 63090 CCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGA 63148 |||||||| |||| || || || || || | ||| | | || ||||||| | | | Sbjct 17055474 CCAGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTGCT-GAGCCTTCACCACACG 17055532 Query 63149 TTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAAC 63208 || |||| || || || ||| || || | | ||| ||||| || ||||| Sbjct 17055533 CTTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCA 17055592 Query 63209 ATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63268 | |||| || || || || | || ||||||| ||||| ||| ||| | || ||| Sbjct 17055593 CTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTCTCCAC 17055652 Query 63269 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTC 63328 || ||||| ||||| ||||| ||||| || || || || || || | || || || Sbjct 17055653 CCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTC 17055712 Query 63329 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63388 ||| ||||| || ||||| || || || ||||| | | | |||| | ||||| || || Sbjct 17055713 CTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTC 17055772 Query 63389 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63448 || ||| ||||| | | || || | |||||| || |||||||| | || | || || Sbjct 17055773 CAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATACCGTGCTGT 17055832 Query 63449 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63508 ||| || || || ||||||||||| | || ||||| || || ||||| |||| || Sbjct 17055833 GTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGCCGGCAAT 17055892 Query 63509 ATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63568 |||| || ||| | || || | || | || || || || || ||| || Sbjct 17055893 GTAGCTCCCCGTGGATCTGATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGA 17055952 Query 63569 GATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTT 63628 ||| | ||||| | || | ||||| ||||| || || ||||| ||||| ||||| Sbjct 17055953 GATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCCTTCATGGC 17056012 Query 63629 AAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGA 63688 || || || ||||| |||| || | | | ||||| ||||| || | ||| || || Sbjct 17056013 GAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGA 17056072 Query 63689 AGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63748 ||||| || ||||| || || || || || ||||| ||||| || || | || ||||| Sbjct 17056073 GGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGCTTCGATATC 17056132 Query 63749 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 | || ||||| || || || | ||| | ||||||||| || | ||| | | ||| Sbjct 17056133 CGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTT 17056192 Query 63809 GTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 63868 | || || || | || |||||| |||| ||| || || ||||| |||| || || Sbjct 17056193 GCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAGAAGTTATAGGA 17056252 Query 63869 AAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATC 63928 || |||| || || || || |||| || || || || | | ||| || || Sbjct 17056253 GAAATCTCTGTCATAGATTATGGCCGAGTTAAGGCGGTCTTTGTTTGCAAGAACAATGTC 17056312 Query 63929 CATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTA--GGATTAACATAGTTG 63986 | || | |||| || || || || | | || | || || | |||||| Sbjct 17056313 GAGTGTGTCTTTCGAAACCATGGGGGA--GTGGCGTTTGTTCAGGGGGTTGATGTAGTTG 17056370 Query 63987 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATG 64046 | | |||||||| || || || || | || || || || ||||| || || || | Sbjct 17056371 TACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTAGAGACA 17056430 Query 64047 GCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATT 64106 || || | ||||| || |||||||| || || | | || || |||||| || || Sbjct 17056431 GCAATGCGTGCGGCGAGTATGGCATAGTCGGGGTACTTGGTTGTGAGAGTGGCAGCGATC 17056490 Query 64107 TCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACC 64166 || || ||||| ||||| | || || || || || || | || | || || || ||| Sbjct 17056491 TCCGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATGACC 17056550 Query 64167 TTCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCT- 64225 ||||| | || | | || || | | ||| |||| | |||||||| || |||| Sbjct 17056551 TTCATCGTGATCTGAGCTGGGTCCACAAACTCCATGTTGAGTCCATAGCA-AAGCTTCTG 17056609 Query 64226 AATACGAGACGTGATTTTATCAAACATGAC 64255 || ||||| |||||||| || |||||||| Sbjct 17056610 GATGCGAGATGTGATTTTGTCGAACATGAC 17056639 >seq11 Length=32426571 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62997 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63056 ||||| ||||| ||||| || | ||||| || || | |||||| ||||||||||| || Sbjct 23758247 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTCCTG 23758188 Query 63057 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63116 || || || ||||| ||||| || |||| ||||||||||| |||| || || || || Sbjct 23758187 TTGCAGGCGTCCTTGTAAAGCATATATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 23758128 Query 63117 GCTTTCCA 63124 || | ||| Sbjct 23758127 GCATACCA 23758120 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 23757120 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 23757061 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 23757060 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 23757001 Query 63783 ATGTGCTGAGGTCTTTCAACAA 63804 |||||||| |||| ||| ||| Sbjct 23757000 ATGTGCTGGGGTCGCTCAGCAA 23756979 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/183 (70%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 63989 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGC 64048 |||||| | |||| |||| |||| ||| || || || ||||| || || |||| || Sbjct 23755154 TAAATCAGCACTCAC--CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGC 23755097 Query 64049 TATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 64108 || | || || || || ||||| || || |||| || || |||||| || | || Sbjct 23755096 GATGCGTGCAGCCAGGATTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTC 23755037 Query 64109 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64168 |||||||||||||| | || || || || |||||| | || | || || || ||||| Sbjct 23755036 TGCTGCCAGAGTGTCAAGCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTT 23754977 Query 64169 CAT 64171 ||| Sbjct 23754976 CAT 23754974 >seq16 Length=36154882 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 34078 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 34137 |||| || ||| |||||||||| |||||||||||||| || ||||| | ||||||||||| Sbjct 10882391 CCACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCAT 10882332 Query 34138 GATATTGGATTGGGAAAATAACAAA 34162 | |||| ||| ||||| || || || Sbjct 10882331 GGTATTTGATGGGGAAGATGACGAA 10882307 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 34078 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 34137 |||| || ||| |||||||||| |||||||||||||| || ||||| | ||||||||||| Sbjct 10898087 CCACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCAT 10898146 Query 34138 GATATTGGATTGGGAAAATAACAAA 34162 | |||| ||| ||||| || || || Sbjct 10898147 GGTATTTGATGGGGAAGATGACGAA 10898171 >seq21 Length=37011614 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| || ||||| | ||||| || | || || || ||||||||||| | ||| | Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| | || | ||| ||||| || || |||||||| ||||| || || ||||| | Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 18722733 Query 33724 C 33724 | Sbjct 18722732 C 18722732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629797390727760