Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq15 152 5e-32 >seq15 Length=39264731 Score = 152 bits (168), Expect = 5e-32 Identities = 906/1432 (63%), Gaps = 19/1432 (1%) Strand=Plus/Plus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 ||||| || || || | |||||| || || || | || | | || || || ||||| Sbjct 17054754 AGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGGGTGTAGATGTTGCTT 17054813 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | || |||||||| || || | | || || | || || || || ||||| Sbjct 17054814 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 17054873 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||| || |||| |||||| | || ||| || || ||| Sbjct 17054874 GGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCCTTCAGCAGCTTC 17054933 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||||| | || ||||| |||| |||||| || || || ||||| || |||||| Sbjct 17054934 CAGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGAATGCCCTTACTC 17054993 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTT-AGCTAGTTCGCAACTAGA 37421 | || || | | ||| |||||||| ||| | || | ||| || ||||| || | Sbjct 17054994 ACCGGCGAGCCTTCATACGTCTCATA-GGTGCCTAGCTCGGCAGCCAGCTCGCAGCTCGC 17055052 Query 37422 TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTC 37481 ||| | |||||||| || ||||| || || || || || || | | || || || Sbjct 17055053 TTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTTGAGCAGTTGAGCCTCGGG 17055112 Query 37482 GCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACC 37541 ||| || || | ||| | || | || || |||||||||| ||||| || ||||| || Sbjct 17055113 GCTTTCAAAGGGATAACGCATGAGGATGAAGGCATCAGCCAATCCCTGGACCCCGATTCC 17055172 Query 37542 TATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATC 37601 ||| || || || | | || || || | |||| ||| || || || ||||| || Sbjct 17055173 TATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGGTAGTAGTTGATGTC 17055232 Query 37602 TATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAAT-TATTCTCAACTTGTCGAA-- 37658 || | || || | || | || | || ||| || | ||| | || || | || Sbjct 17055233 GATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGTATGC-CAGTTTTTTAAAGT 17055291 Query 37659 CATAAATACGTT-ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAG 37717 ||||| | || | | | || | | | | | ||||| | ||||| || || | Sbjct 17055292 CATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCG 17055351 Query 37718 CAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTG 37777 | || || || | | || | | | | || || || || || || || | | || | Sbjct 17055352 CCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGG 17055411 Query 37778 TTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCG 37837 | |||| ||| || ||| || | || || | ||||| || | || ||||||| Sbjct 17055412 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCG 17055471 Query 37838 TTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGAT- 37895 | || |||| | || | |||||| || | | ||||| || || || || || | Sbjct 17055472 TCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCATAG-CTGCTGAGCCTTCACCACA 17055530 Query 37896 CGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCA 37955 ||||| | | || | || ||| | || | || | ||| || | |||||| Sbjct 17055531 CGCTTCACCCTCCC-CTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCA 17055589 Query 37956 TACATCGCAT--AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTT 38013 || | ||| | ||| || || ||| ||| ||||| || ||||| ||||| | || Sbjct 17055590 G-CA-CTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTC 17055647 Query 38014 TCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCT 38072 || || || | ||| || | ||||| | ||| | || ||| || | || ||| || Sbjct 17055648 TCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGC-GTAGAACAGGTCCCTGGCTCG 17055706 Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCC 38131 | || || || || ||||| ||| |||| || || || || | |||| ||||| Sbjct 17055707 CTGCTCCTCCTTTCCCGTGTTCTT-CTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCC 17055765 Query 38132 ATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATC 38191 | || || | || || | | || || |||||||| | || ||||||| || ||| | Sbjct 17055766 AGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAACATACC 17055825 Query 38192 TAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATAC 38251 ||||||| || || | || ||||| || || | || || || |||||| | | Sbjct 17055826 GTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGC 17055885 Query 38252 CGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCAT 38311 ||| || || | ||| | | || || || | | || || || || || || Sbjct 17055886 CGGCAATGTAGCTCCCCGTGGATCTGATGCAGCTGACTGCCACGCCAATCCCTCCGGCTG 17055945 Query 38312 GTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCT 38371 ||| || || | ||||| || || | || || | || || || || |||||||||| Sbjct 17055946 ATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCCT 17056005 Query 38372 TTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATG 38431 | || | || | || || || |||| || ||| ||||| || || || | | Sbjct 17056006 TCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGG 17056065 Query 38432 TAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCAT 38491 | || || || || ||||||| || || |||| || || || || || | | | Sbjct 17056066 TCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGCTT 17056125 Query 38492 CTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 | ||||| ||||| || || | || |||||||| ||||| || || || Sbjct 17056126 CGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATGTGCTGCGG 17056177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468509766210480