Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq15 423 3e-113 seq11 100 4e-16 seq21 87.8 2e-12 >seq15 Length=39264731 Score = 423 bits (468), Expect = 3e-113 Identities = 1281/1974 (65%), Gaps = 21/1974 (1%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| ||||||||| | || || | | ||||| ||||| |||||||| | || Sbjct 17054675 CTGGATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCT 17054734 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || | || | || || || || || || | ||||| || || || | || | Sbjct 17054735 CTCCGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCG 17054794 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || || || || | || | ||||| || || |||| || || || Sbjct 17054795 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 17054854 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| || | || || || | || | | | ||| Sbjct 17054855 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 17054914 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | ||| || |||| || Sbjct 17054915 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGTA 17054974 Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 || ||||| || ||||| | ||| ||| |||| || || || | ||| || | Sbjct 17054975 CTGAAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCTAGCTCGGC 17055034 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 ||| || || || ||||| || || || | || || || || || ||||||| | || Sbjct 17055035 AGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTT 17055094 Query 65507 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 65566 || ||| || || |||| ||||| |||||| | ||| || || || || || || Sbjct 17055095 GAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATGAGGATGAAGGCATCAGCCAA 17055154 Query 65567 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 65626 ||| || || || || || || || || || | | | || || | |||||| | Sbjct 17055155 TCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCAC 17055214 Query 65627 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 65686 || || || || || || |||| || || | || ||||||||||||||| ||| | Sbjct 17055215 CGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGTA 17055274 Query 65687 CTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACAGA 65743 |||||| ||| ||| | |||||| | || ||||||| | || | ||| Sbjct 17055275 TGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATAGA 17055334 Query 65744 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT-----ATCTCAGTG 65798 |||||||| || || || ||||| | | | | || |||| | || || ||| Sbjct 17055335 GGCCAGATTGCAGACCGCCACCTCGTC--CTTGC---TAGTGTACTCGACGATTTCCGTG 17055389 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 65858 ||||| || || ||||||||||| || | ||| || || || ||||| |||| || || Sbjct 17055390 CAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCG 17055449 Query 65859 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 65918 || || || | ||| | || || |||||||| |||| || || || || || | ||| Sbjct 17055450 TCTTTGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCAT 17055509 Query 65919 A-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAA 65977 | | || ||||||| | | | || ||| || || || ||| || || | Sbjct 17055510 AGCTGCT-GAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAG 17055568 Query 65978 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 66037 | ||| ||||| || ||||| | |||| ||| || || || | || ||||||| Sbjct 17055569 TTCTTCAAACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAG 17055628 Query 66038 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 ||||| ||| ||| | || ||| || ||||| ||||| ||||| ||||| || || Sbjct 17055629 GGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTA 17055688 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 || | || |||| || || ||||| ||||| || ||||| || || || ||||| | Sbjct 17055689 GAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTC 17055748 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | | |||| | ||||| || |||| ||| ||||| | | || || | |||||| || Sbjct 17055749 AAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCC 17055808 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 |||||||| | || | || ||||| || || || ||||||||||| | || || || Sbjct 17055809 CCCCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTT 17055868 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAG 66337 ||| || ||||| |||| || ||||| || | | | || || | || | Sbjct 17055869 GGAACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGCTGACTGCCAC 17055928 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 || || || || || ||| ||||| | ||||| | || | || || ||||| || Sbjct 17055929 GCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCC 17055988 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 ||| || || |||||| ||||| || || || ||||| |||| || | | | || Sbjct 17055989 CTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 17056048 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 ||| ||||| || | ||| || || ||||| || ||||| || || || || || ||||| Sbjct 17056049 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 17056108 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 ||||| || || | || |||||| || ||||| || || || | ||| | ||| Sbjct 17056109 GGTCTCGATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCAT 17056168 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 |||||| || | ||| | | ||| || || || | || |||||| |||| ||| Sbjct 17056169 GTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGT 17056228 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 66697 || || ||||| |||| || || || |||| || || || || ||||||| || Sbjct 17056229 CTTGAAGCCAAAGAAGTTATAGGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGCG 17056288 Query 66698 ATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCC 66757 || || | | ||| | || | || | |||| || || || || | Sbjct 17056289 GTCTTTGTTTGCAAGAACAATGTCGAGTGTGTCTTTCGAAACCATGGGGGA--GTGGCGT 17056346 Query 66758 ATTTTTA--GGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 66815 | || | || |||| |||||| | | |||||||| || || || || | || || Sbjct 17056347 TTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTTC 17056406 Query 66816 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGT 66875 || |||||||| || || || || || || | ||||| | |||||||| || || | Sbjct 17056407 GTCTCTTTGTGCAGGTTAGAGACAGCAATGCGTGCGGCGAGTATGGCATAGTCGGGGTAC 17056466 Query 66876 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 66935 | || || |||||| || || || || ||||| ||||| | || || || || || Sbjct 17056467 TTGGTTGTGAGAGTGGCAGCGATCTCCGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACG 17056526 Query 66936 CCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTG 66995 || | || | || ||||| |||||||| | || | | || || | | || || Sbjct 17056527 CCGCTGTACAAACCCTGGATGACCTTCATCGTGATCTGAGCTGGGTCCACAAACTCCATG 17056586 Query 66996 TTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 67048 || | ||||| || || |||| || |||||||||||||| || |||||||| Sbjct 17056587 TTGAGTCCATAGCA-AAGCTTCTGGATGCGAGATGTGATTTTGTCGAACATGAC 17056639 >seq11 Length=32426571 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 ||||| ||||| ||||| || | |||||||| || | |||||| ||||||||||| || Sbjct 23758247 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTCCTG 23758188 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 || || || ||||| ||||| || |||| ||||||||||| |||| || || || || Sbjct 23758187 TTGCAGGCGTCCTTGTAAAGCATATATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 23758128 Query 65910 GCTTTCCA 65917 || | ||| Sbjct 23758127 GCATACCA 23758120 Score = 93.3 bits (102), Expect = 6e-14 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 66782 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGC 66841 |||||| | |||| |||| |||| ||| || || |||||||| || || ||||| || Sbjct 23755154 TAAATCAGCACTCAC--CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGC 23755097 Query 66842 TATTCTAGCGGCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 66901 || | || || | || ||||| || || |||| || || |||||| || | || Sbjct 23755096 GATGCGTGCAGCCAGGATTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTC 23755037 Query 66902 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 66961 |||||||||||||| | || || || || |||||| | || | || ||||| ||||| Sbjct 23755036 TGCTGCCAGAGTGTCAAGCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTT 23754977 Query 66962 CAT 66964 ||| Sbjct 23754976 CAT 23754974 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 23757120 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 23757061 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 23757060 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 23757001 Query 66576 ATGTGCTGAGGTC 66588 |||||||| |||| Sbjct 23757000 ATGTGCTGGGGTC 23756988 >seq21 Length=37011614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||| || ||||| | |||||||| | || || || ||||||||||| | ||| | Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| | || | |||||||| ||||| ||||| || ||||| || || ||||| | Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 18722733 Query 36300 C 36300 | Sbjct 18722732 C 18722732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658151680880280