Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq5 159 2e-34 >seq5 Length=38038224 Score = 159 bits (176), Expect = 2e-34 Identities = 215/294 (73%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 91815 CCTGCAAAGAGGACTACAACATCATCATGGACACTGTCAGACAA-CTGGAACAAAGTGGC 91873 ||||||| ||||||| || ||||||| ||||| | | ||| || || | | ||| Sbjct 19600846 CCTGCAAGGAGGACTGCAGAATCATCACAGACACAG-CGTCCAAGCTCGAGCGCTGCGGC 19600904 Query 91874 TTCTACTGGGGTCCTTTGGGGGTCGAGGAGGCACATCGTATGCTGCGCAACTCGGCACTG 91933 |||||||||||||| |||| || ||||| || || || ||||| || || | | ||| Sbjct 19600905 TTCTACTGGGGTCCCCTGGGAGTGGAGGACGCTCACCGCATGCTTCGGGACGCCCCGCTG 19600964 Query 91934 GGCAGCTTTCTCATTCGGGATAGCAGGCAAAAGGACGTCTTGTTCACGCTGTCGTATCAC 91993 |||||||| ||||| || |||||| | || || |||||||| ||||||||||| || ||| Sbjct 19600965 GGCAGCTTCCTCATCCGCGATAGCCGTCAGAAAGACGTCTTCTTCACGCTGTCCTACCAC 19601024 Query 91994 TCTGTGACCGGACCCGTCAGTGTGAGGATTGAATACAAGGACAAGCAATTTTCCTTGGCT 92053 | ||||||||| ||||| ||| | || || |||||| || || | || || | || Sbjct 19601025 GCCAAGACCGGACCGGTCAGCGTGCGCATCGACTACAAGCACCAGAAGTTCTCACTAGC- 19601083 Query 92054 GGGAGCAAACAGAGGT-TTTC--ATCGGTCCTTCTCCTGTTGGACCATTACATC 92104 | |||| || ||| |||| | | || || ||| ||||| ||||||||| Sbjct 19601084 --GGGCAACGAGCGGTCTTTCCAAACACTCTTTGCCCTCTTGGAGCATTACATC 19601135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356222455120501