Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq15 444 8e-120 seq21 102 1e-16 seq16 102 1e-16 seq11 96.9 5e-15 >seq15 Length=39264731 Score = 444 bits (492), Expect = 8e-120 Identities = 1293/1976 (65%), Gaps = 25/1976 (1%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| ||||||||| | || || | | ||||| ||||| |||||||| | || Sbjct 17054675 CTGGATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCT 17054734 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || | || | || || || || || || | ||||| || || || | || | Sbjct 17054735 CTCCGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCG 17054794 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || || || || | || | || || || || |||| || || || Sbjct 17054795 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 17054854 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || ||||| ||||| || |||| || | || || || | || | | ||| Sbjct 17054855 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 17054914 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCA 79263 || || || || || |||| | ||||| || || | || | | | | ||| | || Sbjct 17054915 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCCGTTGGAGTCTTC-TCCCACATGTCG 17054972 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 || || ||||| || ||||| | || ||| || || ||||| | ||| || Sbjct 17054973 TACTGAAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCTAGCTCG 17055032 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 | || | || || ||||| || || || | || || || || || || |||| | Sbjct 17055033 GCAGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATG 17055092 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 ||||| ||| || || |||| ||||| |||||| | ||| || || || || || Sbjct 17055093 TTGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATGAGGATGAAGGCATCAGCC 17055152 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 ||||| || || || || || || || || || | | | || || | |||||| Sbjct 17055153 AATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCC 17055212 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | || || || || || || |||| || || | |||||||| ||||||||| ||| Sbjct 17055213 ACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACG 17055272 Query 79564 TCCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACGCGACA 79620 | ||||| ||| ||| | || || | || ||||||| | |||| | Sbjct 17055273 TATGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATA 17055332 Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT-----ATTTCAG 79675 || |||||||| || || || ||||| | | | | || |||| | ||||| | Sbjct 17055333 GAGGCCAGATTGCAGACCGCCACCTCGTC--CTTGC---TAGTGTACTCGACGATTTCCG 17055387 Query 79676 TGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 79735 |||| ||||| || ||||| ||||| || | ||| || || || ||||| |||| || | Sbjct 17055388 TGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGG 17055447 Query 79736 CATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 79795 | || || || | ||| |||| || |||||||| |||| || || || || || | || Sbjct 17055448 CGTCTTTGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACC 17055507 Query 79796 AGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATAT 79854 | | | || ||||||| | | | ||| ||| || || || ||| || || Sbjct 17055508 ATAGCTGCT-GAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCTCATATCTGGTGTAG 17055566 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | | ||| ||||| || ||||| || || | ||| || || ||| | || |||||| Sbjct 17055567 AGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATC 17055626 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | ||||| ||| | | | || || || ||||| ||||| ||||| ||||| || || Sbjct 17055627 AGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCG 17055686 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 || || || |||| || |||||||| ||||| || ||||| || || || ||||| Sbjct 17055687 TAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAG 17055746 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | | |||| | ||||| || |||| ||| ||||| | | || |||| |||||| Sbjct 17055747 TCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTG 17055806 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | || | || ||||| || || || ||||||||||| | || || Sbjct 17055807 CCCCCCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCG 17055866 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 ||||| || ||||| |||| || ||||| || ||| | || || | || Sbjct 17055867 TTGGAACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGCTGACTGCC 17055926 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | || || || || || ||| ||||| | ||||| | || | || || ||||| Sbjct 17055927 ACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATC 17055986 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 ||||| ||||| ||||| ||||| || || || ||||| |||| || | | | Sbjct 17055987 CCCTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTG 17056046 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| || || ||||| || ||||| || || ||||| || ||| Sbjct 17056047 GTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTG 17056106 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || ||||| || || | ||| |||||| || ||||| || || || | ||| | | Sbjct 17056107 TAGGTCTCGATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGC 17056166 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 |||||||| || | ||| | | ||| ||| || || | || ||| || |||| | Sbjct 17056167 ATGTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGA 17056226 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 80574 || || || ||||| |||| || || || |||| || || || || ||||||| || Sbjct 17056227 GTCTTGAAGCCAAAGAAGTTATAGGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGG 17056286 Query 80575 TTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTTTC 80634 || || | | ||| | || | ||| | |||| || || || || | Sbjct 17056287 CGGTCTTTGTTTGCAAGAACAATGTCGAGTGTGTCTTTCGAAACCATGGGGGA--GTGGC 17056344 Query 80635 CCATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692 | || | || || | |||||| | | |||||||| || || || || | || | Sbjct 17056345 GTTTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATGACGTCGCTGAACACCTTCT 17056404 Query 80693 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752 | || || ||||| || || || || || || | ||||| | |||||||| || || | Sbjct 17056405 TCGTCTCTTTGTGCAGGTTAGAGACAGCAATGCGTGCGGCGAGTATGGCATAGTCGGGGT 17056464 Query 80753 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 80812 | || || |||||| || || || || ||||| ||||| | || || || || | Sbjct 17056465 ACTTGGTTGTGAGAGTGGCAGCGATCTCCGCCGCCAGCGTGTCGAGCTCCACGGTGGTGA 17056524 Query 80813 CTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAG 80872 | || | || | || ||||| |||||||| | || | | || || | | || Sbjct 17056525 CGCCGCTGTACAAACCCTGGATGACCTTCATCGTGATCTGAGCTGGGTCCACAAACTCCA 17056584 Query 80873 TGTTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 80927 |||| | ||||| || || |||| || ||||| |||||||| || |||||||| Sbjct 17056585 TGTTGAGTCCATAGCA-AAGCTTCTGGATGCGAGATGTGATTTTGTCGAACATGAC 17056639 >seq21 Length=37011614 Score = 102 bits (112), Expect = 1e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||| || ||||| || |||||||| | || || || ||||||||||| | ||| | Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| | || | |||||||| ||||| |||||||| ||||| || || ||||| | Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 18722733 Query 50102 CAACAA 50107 | |||| Sbjct 18722732 CCACAA 18722727 >seq16 Length=36154882 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | || | Sbjct 10883206 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTTTTCT 10883147 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || |||||||||| Sbjct 10883146 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACGGCGGCAAAGG 10883087 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 10883086 CCACCACGCGCTCTCC 10883071 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | || | Sbjct 10897272 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTTTTCT 10897331 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || || || |||||||| || || || |||||||||| Sbjct 10897332 TCAGCCAGAAGATGGCGGCGAACGAGCCCGAGAAGAAGATCCCCTCCACGGCGGCAAAGG 10897391 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 10897392 CCACCACGCGCTCTCC 10897407 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 || || ||| |||||||||| |||||||||||||| || ||||| | |||||||||||| Sbjct 10882389 ACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGG 10882330 Query 50518 TATTGGATTGGGAAAATAACAAA 50540 |||| ||| ||||| || || || Sbjct 10882329 TATTTGATGGGGAAGATGACGAA 10882307 Score = 87.8 bits (96), Expect = 3e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 || || ||| |||||||||| |||||||||||||| || ||||| | |||||||||||| Sbjct 10898089 ACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGG 10898148 Query 50518 TATTGGATTGGGAAAATAACAAA 50540 |||| ||| ||||| || || || Sbjct 10898149 TATTTGATGGGGAAGATGACGAA 10898171 >seq11 Length=32426571 Score = 96.9 bits (106), Expect = 5e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 79291 GATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAAT 79350 || || | ||| ||||||||||| || || | | || || |||||||| ||||| | Sbjct 23758823 GAGCCGGGGTAGGTTTCATAAGGGCCGAGCTCTGCTGCCAACTCACAACTGGCCTCCAGG 23758764 Query 79351 GCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCA 79410 || |||| || ||||| || || |||| | ||||| || || ||| |||| ||| Sbjct 23758763 GCAGCGTAGTAGATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCA 23758704 Query 79411 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 79470 || ||||| | ||| ||||| || || || | || || |||||||| || || || Sbjct 23758703 AACGGATAGCGCATGAGGATAAAGGCATCAGCCAGACCCTGCACACCAATTCCAATTGGC 23758644 Query 79471 CTATGTCTCTTATTAGAAATTTCAGC 79496 || || | ||| ||||| ||||||| Sbjct 23758643 CTGTGACGCTTGTTAGACCTTTCAGC 23758618 Score = 93.3 bits (102), Expect = 6e-14 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 80661 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGC 80720 |||||| | |||| |||| |||| ||| || || || ||||| || || ||||| || Sbjct 23755154 TAAATCAGCACTCAC--CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGC 23755097 Query 80721 TATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 80780 || | || || | || ||||| ||||| |||| || || |||||| || | || Sbjct 23755096 GATGCGTGCAGCCAGGATTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTC 23755037 Query 80781 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 80840 |||||||||||||| | || || || || |||||| | || | || ||||| ||||| Sbjct 23755036 TGCTGCCAGAGTGTCAAGCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTT 23754977 Query 80841 CAT 80843 ||| Sbjct 23754976 CAT 23754974 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || || || || | |||||||||||||| || ||||| || || ||||| | ||| Sbjct 23757120 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 23757061 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || |||||||| |||| || || || | || |||||| || || | || | ||||| | Sbjct 23757060 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 23757001 Query 80455 ATGTGCTGAGGTC 80467 |||||||| |||| Sbjct 23757000 ATGTGCTGGGGTC 23756988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718245752549880