Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 408 6e-109 seq11 102 1e-16 seq21 93.3 6e-14 >seq15 Length=39264731 Score = 408 bits (452), Expect = 6e-109 Identities = 1279/1973 (65%), Gaps = 19/1973 (1%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| ||||||||| | || || | | || || ||||| |||||||| | || Sbjct 17054675 CTGGATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCT 17054734 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | || || || || || || | ||||| || || || | || | Sbjct 17054735 CTCCGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCG 17054794 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || || || || | || | ||||| || || |||| || || || Sbjct 17054795 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 17054854 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || || || || || | |||||| ||| Sbjct 17054855 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 17054914 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | ||| || |||| ||| Sbjct 17054915 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGT 17054973 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| ||||| | || ||| |||| || || || | ||| | Sbjct 17054974 ACTGAAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCTAGCTCGG 17055033 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 | || || || || ||||| || || || |||| || || || || || |||| | | Sbjct 17055034 CAGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGT 17055093 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| ||| || || ||||| ||||| |||||| | ||| || || || || || | Sbjct 17055094 TGAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATGAGGATGAAGGCATCAGCCA 17055153 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 |||| || || || || || || || ||||| | | | || || | |||||| | Sbjct 17055154 ATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCA 17055213 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || || || || || |||| || || | || ||||| ||||||||| ||| | Sbjct 17055214 CCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGT 17055273 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 ||||| ||| ||| | ||| || | || ||| ||| | || | || Sbjct 17055274 ATGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATAG 17055333 Query 71705 ATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTCAGTGCA 71762 | |||||||| || || || ||||| | | || | || | | ||||| ||||| Sbjct 17055334 AGGCCAGATTGCAGACCGCCACCTCGTCCTTGCTAGTG--TACTCGACGATTTCCGTGCA 17055391 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 ||| || || ||||||||||| || | ||| || || || ||||| |||| || || || Sbjct 17055392 AAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 17055451 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 || || | || |||| || |||||||| |||| || || || || || | ||| | Sbjct 17055452 TTTGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCATAG 17055511 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATC 71941 | || ||||||| | | | ||| ||| || || || ||| || || | | Sbjct 17055512 CTGCT-GAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTT 17055570 Query 71942 GTTCGAACTCGTCTCCCCAAGCATTG-TCTAATCCAGGACATTCATTCGGACACATCAAT 72000 ||| ||||| || ||||| ||| | || | ||| || || || || ||||||| Sbjct 17055571 CTTCAAACTCCTCCCCCCA-GCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGG 17055629 Query 72001 GACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 72060 ||||| ||| | | | | || || ||||| ||||| ||||| ||||| || || Sbjct 17055630 GACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAG 17055689 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || || || |||| || |||||||| ||||| || ||||| || || || ||||| | Sbjct 17055690 AACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCA 17055749 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | |||| | ||||| || |||| ||| ||||| | | || || | |||||| || Sbjct 17055750 AACACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCC 17055809 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 |||||||| | || | || ||||| || || || ||||||||||| | || || ||| Sbjct 17055810 CCCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTG 17055869 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGA 72300 || || ||||| |||| || ||||| || ||| | || ||| | || | Sbjct 17055870 GAACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGCTGACTGCCACG 17055929 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || || ||| ||||| | ||||| | || | || || ||||| ||| Sbjct 17055930 CCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCCC 17055989 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || || |||||| ||||| || || || ||||| |||| || | | | ||| Sbjct 17055990 TCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTT 17056049 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || ||||| || | ||| || || ||||| || ||||| || || ||||| || ||||| Sbjct 17056050 CCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAG 17056109 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 ||||| || || | ||| |||||| || ||||| || || || | ||| | ||| Sbjct 17056110 GTCTCGATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCATG 17056169 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 ||||| || | ||| | | ||| ||| || || | || |||||| |||| ||| Sbjct 17056170 TGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGTC 17056229 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660 || || ||||| |||| || || || |||| || || || || |||| || || Sbjct 17056230 TTGAAGCCAAAGAAGTTATAGGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGCGG 17056289 Query 72661 TCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCA 72720 || || | | ||| || || | ||| | |||| || || || || | Sbjct 17056290 TCTTTGTTTGCAAGAACAATGTCGAGTGTGTCTTTCGAAACCATGGGGGA--GTGGCGTT 17056347 Query 72721 TTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttG 72778 | || | || || | |||||| | | |||||||| || || || || | || || | Sbjct 17056348 TGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTTCG 17056407 Query 72779 TTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTT 72838 | || ||||| || || || || || || | ||||| || |||||||| || || | | Sbjct 17056408 TCTCTTTGTGCAGGTTAGAGACAGCAATGCGTGCGGCGAGTATGGCATAGTCGGGGTACT 17056467 Query 72839 GTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTC 72898 || || |||||| || || || || ||||| ||||| | || || || || || | Sbjct 17056468 TGGTTGTGAGAGTGGCAGCGATCTCCGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACGC 17056527 Query 72899 CATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGT 72958 | | || | || ||||| |||||||| | || | | || || | | || ||| Sbjct 17056528 CGCTGTACAAACCCTGGATGACCTTCATCGTGATCTGAGCTGGGTCCACAAACTCCATGT 17056587 Query 72959 TTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 | | ||||| || || |||| || ||||| |||||||| || ||||| || Sbjct 17056588 TGAGTCCATAGCA-AAGCTTCTGGATGCGAGATGTGATTTTGTCGAACATGAC 17056639 >seq11 Length=32426571 Score = 102 bits (112), Expect = 1e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 72744 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGC 72803 |||||| | |||| |||| |||| ||| || || || ||||| || || ||||| || Sbjct 23755154 TAAATCAGCACTCAC--CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGC 23755097 Query 72804 TATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 72863 || | || || || || ||||| ||||| |||| || || |||||| || | || Sbjct 23755096 GATGCGTGCAGCCAGGATTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTC 23755037 Query 72864 TGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 ||||||||||||||| | || || || || |||||| | || | || ||||| ||||| Sbjct 23755036 TGCTGCCAGAGTGTCAAGCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTT 23754977 Query 72924 CAT 72926 ||| Sbjct 23754976 CAT 23754974 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 || || ||||| ||||| || | |||||||| || | |||||| ||||||||||| || Sbjct 23758247 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTCCTG 23758188 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 || || || ||||| ||||| ||| | || ||||||||||| |||| || || || || Sbjct 23758187 TTGCAGGCGTCCTTGTAAAGCATATATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 23758128 Query 71872 GCTTTCCA 71879 || | ||| Sbjct 23758127 GCATACCA 23758120 >seq21 Length=37011614 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| || || ||||| | |||||||| | || || || ||||||||||| | ||| | Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| | |||| |||||||| ||||| |||||||| ||||| || || ||||| | Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 18722733 Query 42207 C 42207 | Sbjct 18722732 C 18722732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671117664820920