Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq15 150 3e-31 >seq15 Length=39264731 Score = 150 bits (166), Expect = 3e-31 Identities = 370/557 (66%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| ||| || || || |||||| | || ||||||| | |||| Sbjct 17055883 ACCAACGGCTGTTCCAACGGGCTTGTCCCAATGTTGAGGGTGTACAACAACACAGCACGG 17055824 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 || ||| ||||| ||||| ||| | || ||||| | ||| | ||| |||| || ||| Sbjct 17055823 TATGTTGATCAGGGGGGCAACAAAAGACCCGGCGCCTTCGCCATGTACCTGGAGCCCTGG 17055764 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| || || |||||||| | ||| || || ||| | || || ||| ||| Sbjct 17055763 CACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGCGA 17055704 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAAC 97043 ||||||||| |||| || || || ||| | || || | ||||||||||| || ||| Sbjct 17055703 GCCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGCGGGTGGAGAAC 17055644 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 ||| | ||||| ||| |||||||| | | | ||||| ||| || |||||| Sbjct 17055643 AACGAAG---ACTGGTCCCTGATGTGCCCAGCCGACTGCCCCGGACTGGATGAGTGCTGG 17055587 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGA 97163 || || |||||||| | ||||| || ||| ||||| || |||| || Sbjct 17055586 GGGGAGGAGTTTGAAGAACTCTACACCAGATATGAGAGGGAGGG--GA-GGGTGAAGCGT 17055530 Query 97164 GTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 || | | || | | || ||| | || ||| | | | ||| ||| ||||| || Sbjct 17055529 GTGGTGAAGGCTCAGCAGCTATGGTATGCAATCATCGAGTCGCAGACAGAAACTGGGACG 17055470 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 |||||||| ||||||| || || || | || |||||||| | | |||||||| Sbjct 17055469 CCGTACATGGTCTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACC 17055410 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 |||||| || ||| || ||||||||||| || |||||| | ||||||| ||| Sbjct 17055409 ATCAAGTGCAGCAACCTTTGCACGGAAATCGTCGAGTACACTAGCAAGGACGAGGTGGCG 17055350 Query 97341 GTTTGCGTTCTGGCATC 97357 || ||| |||||| || Sbjct 17055349 GTCTGCAATCTGGCCTC 17055333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741035421262920