Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1437 154 3e-32 seq16 104 5e-17 seq21 98.7 2e-15 >seq1437 Length=1065406 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 779096 ATGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 779155 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || |||||||| || ||||||||||| ||||| Sbjct 779156 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGG 779215 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| || || || || ||||| || | ||| ||||| || || Sbjct 779216 GGAATGCCTTCCTTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCA 779275 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 779276 ACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 779328 >seq16 Length=36154882 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || |||||||| || || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 10883083 GTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCTGG 10883142 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||||||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 10883143 CTGAAGAAAAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 10883202 Query 269258 GA 269259 || Sbjct 10883203 GA 10883204 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || |||||||| || || || || ||||| ||||| || || ||||| ||||| ||| Sbjct 10897395 GTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCTGG 10897336 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||||||||||| ||||| || | || ||||| ||||| | || ||||| ||| Sbjct 10897335 CTGAAGAAAAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGAC 10897276 Query 269258 GA 269259 || Sbjct 10897275 GA 10897274 >seq21 Length=37011614 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| ||||| ||||| || ||||| || || || ||||| ||||||| ||| Sbjct 18722729 GTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCTGCTATCTACTGG 18722788 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| || ||||| ||||| || | || | ||| ||||| | || ||||||||| Sbjct 18722789 CTGAAGAAGAGGGGCCTAATGCCTGGCCTTACCTACTCCAACGAGCTCATTAGCAGGGAC 18722848 Query 269258 GA 269259 || Sbjct 18722849 GA 18722850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151360530866436