Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq10 114 9e-21 >seq10 Length=27519051 Score = 114 bits (126), Expect = 9e-21 Identities = 131/175 (75%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||| ||||| || || | |||||||||||| || ||||| ||||||||||| Sbjct 14138927 CATGTCTGTGTATTCTGCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTC 14138986 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || || | || || || |||| ||||| | || || ||||| || Sbjct 14138987 ACCCTCCTCTCTATCAGTGAACCCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATC 14139046 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 25946 ||||||||| || || || || || ||||| ||||| ||||| || |||| |||| Sbjct 14139047 CCAGATCTTCACTCCTTTTTCTGATAGCTCCTTGGAATTTGTTGATCCCTGTGAC 14139101 Score = 95.1 bits (104), Expect = 8e-15 Identities = 119/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || |||| || || |||||||| || || || | |||||||| ||||| || || Sbjct 14138113 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCAATGTTGAAAGGC 14138172 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 ||||| || ||||| || | || | |||||| ||||||||||| ||||| |||||| Sbjct 14138173 ACCCCTAATCCCATATCAGCT-GAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCA 14138231 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 ||| || ||||| || | | || ||| || || || || || Sbjct 14138232 CACATAGAACTGGCAGAGTGCGTGGCAGGGGGGCAGCGCCAT 14138273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340126958688891