Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq7 87.8 9e-13 seq5 86.0 3e-12 seq3 86.0 3e-12 seq23 82.4 4e-11 seq22 82.4 4e-11 seq18 82.4 4e-11 seq13 82.4 4e-11 seq4 82.4 4e-11 >seq7 Length=44571662 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| | ||| | || ||||||| | |||||||||| ||||||| |||||||||||| Sbjct 6018608 TAAAAGAAATTGAAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCA 6018667 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 | ||||||| |||||||||||||| |||| Sbjct 6018668 CCACGCTCTAACCAACTGAGCTAACCGGCC 6018697 Score = 86.0 bits (94), Expect = 3e-12 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| |||||| | | | |||||| | |||||||||| ||||||| ||||||||||| Sbjct 21408958 TAAAAAAAAAGCTACTGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGC 21408899 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||| |||||||||||||| |||| Sbjct 21408898 ACCACGCTCTAACCAACTGAGCTAACCGGCC 21408868 >seq5 Length=38038224 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| |||||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 8345583 TGGCCCATACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 8345642 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 8345643 TGAGCTAACCGGCC 8345656 >seq3 Length=14041792 Score = 86.0 bits (94), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||||| || |||||| | || |||||| | |||||||||| ||||||| |||| Sbjct 4048401 TAGAAAAAAAGAAAAATTAGTAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGT 4048460 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||| |||||||||||||| |||| Sbjct 4048461 TATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 4048498 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3128553 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3128494 Query 11528 CC 11529 || Sbjct 3128493 CC 3128492 Score = 82.4 bits (90), Expect = 4e-11 Identities = 70/86 (81%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| ||| || |||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 3128871 AAAATTCAGATCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 3128812 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 | ||| |||||||||||||| |||| Sbjct 3128811 GTTCTAACCAACTGAGCTAACCGGCC 3128786 >seq23 Length=43860769 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 31154783 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 31154724 Query 11528 CC 11529 || Sbjct 31154723 CC 31154722 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 31432960 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 31433019 Query 11528 CC 11529 || Sbjct 31433020 CC 31433021 >seq22 Length=44097196 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 27647756 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 27647815 Query 11528 CC 11529 || Sbjct 27647816 CC 27647817 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 30017624 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 30017683 Query 11528 CC 11529 || Sbjct 30017684 CC 30017685 >seq18 Length=37007722 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21850118 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21850059 Query 11528 CC 11529 || Sbjct 21850058 CC 21850057 >seq13 Length=41232431 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 15321575 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 15321516 Query 11528 CC 11529 || Sbjct 15321515 CC 15321514 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 15325866 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 15325807 Query 11528 CC 11529 || Sbjct 15325806 CC 15325805 >seq4 Length=54508961 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 10808933 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 10808992 Query 11528 CC 11529 || Sbjct 10808993 CC 10808994 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 10834087 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 10834146 Query 11528 CC 11529 || Sbjct 10834147 CC 10834148 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 10871574 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 10871633 Query 11528 CC 11529 || Sbjct 10871634 CC 10871635 Lambda K H 0.639 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483019166092