Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq17 150 3e-31 seq13 131 2e-25 seq8 118 2e-21 >seq17 Length=40919683 Score = 150 bits (166), Expect = 3e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || |||||||||||||| |||||||| |||||||||||||| || |||| ||||| Sbjct 2456387 CCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCCATTAGGCCC 2456446 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || |||||||||| ||| | || | || || |||||| |||| || | | Sbjct 2456447 TTGAGGGAGAAAGGAGCCCCCATCTCCACCATTGTTTCCCCAAAGATGCCGTTAGGTCTG 2456506 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 ||||| ||||||| | || | ||| | ||||||||| |||| ||| ||||| || || Sbjct 2456507 GGCTTCTCCACCAGCAGGCCCGGGTAGAGCTCCACAGCATCGACGTCCCCGTACAGCTCC 2456566 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||||| ||||| || || |||| Sbjct 2456567 TCCAGCACCGCAGCCATTTCTTTCTCCCCTG 2456597 Score = 141 bits (156), Expect = 1e-28 Identities = 126/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9613 CCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCT 9672 ||||| | |||||| || | |||||| || ||| ||||||| ||| | ||| || | Sbjct 2458084 CCGATTAGGATGAGCCGTGCGGTCTGGAAGAGTCTTTCGTCATCCCAGTATGGGTGGACC 2458143 Query 9673 CGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATG 9732 |||||| ||||||||||| | ||||||||| | ||||||||| || ||||||||||| Sbjct 2458144 TCTTTCAGCACATCGCACACACGGTTGTGTTCGCGGAGCCAGATGGTGGCGTACATCATC 2458203 Query 9733 AGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 |||||||| |||||||| || ||||| || |||||||| Sbjct 2458204 AGACCAGGGACCAGGCCGAATGCCTCGTGGCCGACAGC 2458241 Score = 89.7 bits (98), Expect = 7e-13 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| || || || || || || |||||||| || || || | | | |||||||| || Sbjct 2457421 CTTACCCGTCCGGCAATCTGATTGGTGAACGACTCCACCAGGTTGCTGATGCCGTGC-TC 2457479 Query 9382 A-TGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTTTGTTTTATCAATCTC 9440 | | | | || ||||| | || || | ||||| || | ||| | ||||| | Sbjct 2457480 AGTCACGACAGAGGTGTTGAAGACAAACTGCTTGTAGCTGTAATCTGTCTCCTCAATGTG 2457539 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 || ||| ||||| |||| ||||||||||| | |||| |||||||| || || Sbjct 2457540 GAAACTATCAGGCATCAGAGGGTGCCAGTGATAAAGGGTGTTGAACTCGGATGCAATGCG 2457599 Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 || ||||||||||| || | ||||||||| || || | |||| || | |||| Sbjct 2457600 GTTCTGGTACTGGAAGCGCTG-GTTAAAGAGCAGCTCAGGGTCAAACTTCAGTTTGAAGT 2457658 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | ||||| ||||| ||||| || || Sbjct 2457659 GATAGCCACTGAGATGCTGCACGTA 2457683 >seq13 Length=41232431 Score = 131 bits (144), Expect = 2e-25 Identities = 176/245 (72%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| |||| |||| ||| || || | | ||| || |||||||||| | Sbjct 33073802 GGACACCATTTGCTGTTGAGACACACCAGTTTTTTCAGAGTGGCCGTCTTGACGATATTA 33073743 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || ||||| || ||||||||||| |||||||| | || |||||||| ||| Sbjct 33073742 AAGCCGGTTTCTCCTCCAAAGGTGCTGGGCTTCCAGTATTCAGGCGAGCAGATTGGGTTT 33073683 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | |||||||| |||||||| ||||| |||| ||| | |||||||| || || ||| Sbjct 33073682 CCAAGCAGGCCTTTCAGGGAAAATGGAGCACCCATCTCCACCATGCTCTCTCCAAAAATG 33073623 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || || ||||||| || || | || | || | ||| ||||||| || || ||||| Sbjct 33073622 GCATTAGGACGGGATTTCTCTAGCATTATGCCTGGGTAAAACTCCAGGGCGTCTATGTCA 33073563 Query 8933 CCGTA 8937 ||||| Sbjct 33073562 CCGTA 33073558 >seq8 Length=62059223 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | ||| || ||||||||||| |||||||| |||| ||||| || || Sbjct 16800836 CAAAGCCCACCTTTCCTCCAAAGGTGCTGGGCTTCCAGTATTCCGGAGAGCATATAGGGT 16800895 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| ||||||||| ||||| || || || |||| ||| | ||||| || || || | Sbjct 16800896 TTCCCAGGAGGCCTTTAAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATA 16800955 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | || |||| ||| || |||| ||| || |||| ||| || |||| Sbjct 16800956 TGGCCCCCGCTCGTGTTTTCTCCAACAACAAGCCGGGGTAAAATTCCAGAGCGTCAATGT 16801015 Query 8931 CTCCGTAAAG 8940 | ||||| || Sbjct 16801016 CACCGTAGAG 16801025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708502065210480