Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1437 105 6e-18 >seq1437 Length=1065406 Score = 105 bits (116), Expect = 6e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||| | || || ||||| || | ||| || ||| | ||| | | Sbjct 749802 CGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 749861 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || |||| || | || ||||| || || ||||| ||||| || Sbjct 749862 TCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTA 749921 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||||| |||||||| ||| |||||| | ||| || || || | ||||| Sbjct 749922 TCCTGGATTTTGGCCTTGACATTCTCGATGGTGTCA-CTTGGCTCAACCTCCAGGGTGAT 749980 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 ||| || ||||| || ||||||||||||||||||||| || Sbjct 749981 GGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTTT 750020 Score = 104 bits (114), Expect = 2e-17 Identities = 123/164 (75%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || || || || || ||||| ||||| || Sbjct 779170 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTT 779229 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 ||| | ||||| |||||||| | | ||||| || ||| || || || | |||| Sbjct 779230 GTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTTGGCTCAACCTCCAGGGTGA 779288 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACA 95014 |||| || ||||| || ||||||||||||||||||||| || || Sbjct 779289 TGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTTTGCA 779332 Score = 102 bits (112), Expect = 7e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||| | || || ||||| || | ||| || ||| | ||| | | Sbjct 777973 CGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 778032 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || || ||||| || || || Sbjct 778033 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTA 778092 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||||| ||||||||| | | |||||| | ||| || || || | ||||| Sbjct 778093 TCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCA-CTTGGCTCAACCTCCAGGGTGAT 778151 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || || ||||||||||||||||||| Sbjct 778152 GGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGC 778189 Score = 102 bits (112), Expect = 7e-17 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||| | || || ||||| || | ||| || ||| | ||| | | Sbjct 778883 CGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 778942 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || || ||||| || || || Sbjct 778943 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTA 779002 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | ||||| ||||||||| | | ||||| || ||| || || || | ||||| Sbjct 779003 TCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC-GCTTGGCTCAACCTCCAGGGTGAT 779061 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || || ||||||||||||||||||| Sbjct 779062 GGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGC 779099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || || ||||| ||||| || Sbjct 749406 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTT 749465 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 || | ||||| |||||||| | | |||||| | ||| || || || | |||| Sbjct 749466 ATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCA-CTTGGCTCAACCTCCAGGGTGA 749524 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || ||||| || || ||||| ||||||||||||| Sbjct 749525 TGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGC 749563 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| || | ||| | || || ||||| || | ||| || ||| | ||| | | Sbjct 778201 CGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 778260 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || || ||||||| | || ||||| || || ||||| || || || Sbjct 778261 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTA 778320 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGAT 94971 || | |||| ||||||||| | | ||||| || ||| || || || | ||||| Sbjct 778321 TCCTGGATTTG-GCCTTGACGTTCTCAATGGTGTC-GCTTGGCTCAACCTCCAGGGTGAT 778378 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || || ||||||||||||||||||| Sbjct 778379 GGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGC 778416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || || ||||| || || || Sbjct 778714 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTT 778773 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 || | ||||| ||||||||| | | ||||| || ||| || || || | |||| Sbjct 778774 ATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTC-GCTTGGCTCAACCTCCAGGGTGA 778832 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || ||||| || || ||||| ||||||||||||| Sbjct 778833 TGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGC 778871 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/159 (74%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || || ||||| ||||| || Sbjct 749634 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCCTT 749692 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 || | ||||| |||||||| | | |||||| | ||| || || || | |||| Sbjct 749693 ATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCA-CTTGGCTCAACCTCCAGGGTGA 749751 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || ||||| || || ||||| ||||||||||||| Sbjct 749752 TGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGC 749790 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/159 (74%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || || ||||| || || || Sbjct 778487 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCCTCCTT 778545 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGA 94970 || | ||||| |||||||| | | ||||| || ||| || || || | |||| Sbjct 778546 ATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTC-GCTTGGCTCAACCTCCAGGGTGA 778604 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| || ||||| || || ||||| ||||||||||||| Sbjct 778605 TGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGC 778643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448276815456120