Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq15 432 5e-116 seq21 96.9 4e-15 seq11 96.9 4e-15 seq16 82.4 1e-10 >seq15 Length=39264731 Score = 432 bits (478), Expect = 5e-116 Identities = 1283/1974 (65%), Gaps = 21/1974 (1%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| ||||||||| | || || | | ||||| ||||| |||||||| | || Sbjct 17054675 CTGGATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCT 17054734 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || | || | || || || || || || | ||||| || || || | || | Sbjct 17054735 CTCCGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCG 17054794 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || || || || | || | ||||| || || |||| || || || Sbjct 17054795 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 17054854 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| || | || || || | || | | | ||| Sbjct 17054855 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 17054914 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || |||| || Sbjct 17054915 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGTA 17054974 Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602 || ||||| || ||||| | ||| ||| |||| || || || | ||| || | Sbjct 17054975 CTGAAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCTAGCTCGGC 17055034 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 ||| || || || ||||| || || || | || || || || || ||||||| | || Sbjct 17055035 AGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTT 17055094 Query 62663 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62722 || ||| || || |||| ||||| |||||| | ||| || || || || || || Sbjct 17055095 GAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATGAGGATGAAGGCATCAGCCAA 17055154 Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782 ||| || || || || || || || || || | | | || || | |||||| | Sbjct 17055155 TCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCAC 17055214 Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62842 || || || || || || |||| || || | || ||||||||||||||| ||| | Sbjct 17055215 CGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGTA 17055274 Query 62843 CTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAAGGCAACAGA 62899 |||||| ||| ||| | ||| || | || ||||||| | || | ||| Sbjct 17055275 TGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATAGA 17055334 Query 62900 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT-----ATCTCAGTG 62954 |||||||| || || || ||||| | | | | || |||| | || || ||| Sbjct 17055335 GGCCAGATTGCAGACCGCCACCTCGTC--CTTGC---TAGTGTACTCGACGATTTCCGTG 17055389 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 ||||| || || |||||||| || || | ||| || || || ||||| |||| || || Sbjct 17055390 CAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCG 17055449 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 || || || | ||| | || || |||||||| |||| || || || || || | ||| Sbjct 17055450 TCTTTGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCAT 17055509 Query 63075 A-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAA 63133 | | || ||||||| | | | || |||| || || || ||| || || | Sbjct 17055510 AGCTGCT-GAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAG 17055568 Query 63134 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAA 63193 | ||| ||||| || ||||| | |||| ||| || || || | || ||||||| Sbjct 17055569 TTCTTCAAACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAG 17055628 Query 63194 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 ||||| ||| ||| | || ||| || ||||| ||||| ||||| ||||| || || Sbjct 17055629 GGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTA 17055688 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 || || || |||| || || ||||| ||||| || ||||| || || || ||||| | Sbjct 17055689 GAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTC 17055748 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | | |||| | ||||| || |||| ||| ||||| | | || || | |||||| || Sbjct 17055749 AAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCC 17055808 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 |||||||| | || | || ||||| || || || ||||||||||| | || ||||| Sbjct 17055809 CCCCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTT 17055868 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63493 || || ||||| |||| || ||||| || ||| | || || | || | Sbjct 17055869 GGAACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGCTGACTGCCAC 17055928 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || || || || ||| ||||| | ||||| | || | ||||| ||||| || Sbjct 17055929 GCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCC 17055988 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||| ||||| ||||| ||||| || || || ||||| |||| || | | | || Sbjct 17055989 CTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 17056048 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 ||| ||||| || | ||| || || ||||| || ||||| || || || || || ||||| Sbjct 17056049 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 17056108 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 ||||| || || | || |||||| || ||||| || || || | ||| | ||| Sbjct 17056109 GGTCTCGATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCAT 17056168 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 |||||| || | ||| | | ||| || || || | || |||||| |||| ||| Sbjct 17056169 GTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGT 17056228 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 || || ||||| |||| || || || |||| || || || || ||||||| || Sbjct 17056229 CTTGAAGCCAAAGAAGTTATAGGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGCG 17056288 Query 63854 ATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCC 63913 || || | | ||| || || | ||| | |||| || || || || | Sbjct 17056289 GTCTTTGTTTGCAAGAACAATGTCGAGTGTGTCTTTCGAAACCATGGGGGA--GTGGCGT 17056346 Query 63914 ATTTTTA--GGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 63971 | || | || || | |||||| | | |||||||| || || || || | || || Sbjct 17056347 TTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTTC 17056406 Query 63972 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031 || || ||||| || || || || || || | ||||| || |||||||| || || | Sbjct 17056407 GTCTCTTTGTGCAGGTTAGAGACAGCAATGCGTGCGGCGAGTATGGCATAGTCGGGGTAC 17056466 Query 64032 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 64091 | || || |||||| || || || || ||||| ||||| | || || || || || Sbjct 17056467 TTGGTTGTGAGAGTGGCAGCGATCTCCGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACG 17056526 Query 64092 CCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTG 64151 || | || | || || || |||||||| | || | | || || | | ||| || Sbjct 17056527 CCGCTGTACAAACCCTGGATGACCTTCATCGTGATCTGAGCTGGGTCCACAAACTCCATG 17056586 Query 64152 TTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64204 || | ||||| || || |||| || ||||| |||||||| || |||||||| Sbjct 17056587 TTGAGTCCATAGCA-AAGCTTCTGGATGCGAGATGTGATTTTGTCGAACATGAC 17056639 >seq21 Length=37011614 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||| || ||||| || |||||||| | || || || ||||||||||| | ||| | Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| | || | ||| ||||| ||||| |||||||| ||||| || || ||||| | Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 18722733 Query 33446 C 33446 | Sbjct 18722732 C 18722732 >seq11 Length=32426571 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 ||||| ||||| ||||| || | ||||| || || | |||||| ||||||||||| || Sbjct 23758247 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTCCTG 23758188 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 || || || ||||| ||||| || |||| ||||||||||| |||| || || || || Sbjct 23758187 TTGCAGGCGTCCTTGTAAAGCATATATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 23758128 Query 63066 GCTTTCCA 63073 || | ||| Sbjct 23758127 GCATACCA 23758120 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 || || || || || | |||||||||||||| || ||||| || || || || | ||| Sbjct 23757120 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 23757061 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 23757060 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 23757001 Query 63732 ATGTGCTGAGGTC 63744 |||||||| |||| Sbjct 23757000 ATGTGCTGGGGTC 23756988 Score = 89.7 bits (98), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 63938 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGC 63997 |||||| | |||| |||| |||| ||| || || || ||||| || || ||||| || Sbjct 23755154 TAAATCAGCACTCAC--CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGC 23755097 Query 63998 TATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 64057 || | || || || || ||||| || || |||| || || |||||| || | || Sbjct 23755096 GATGCGTGCAGCCAGGATTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTC 23755037 Query 64058 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64117 |||||||||||||| | || || || || |||||| | || | || || || ||||| Sbjct 23755036 TGCTGCCAGAGTGTCAAGCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTT 23754977 Query 64118 CAT 64120 ||| Sbjct 23754976 CAT 23754974 >seq16 Length=36154882 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861 || || ||| |||||||||| |||||||||||||| || ||||| | ||||||||||| Sbjct 10882389 ACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGG 10882330 Query 33862 TATTGGATTGGGAAAATAACAAA 33884 |||| ||| ||||| || || || Sbjct 10882329 TATTTGATGGGGAAGATGACGAA 10882307 Score = 82.4 bits (90), Expect = 1e-10 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 33802 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAA 33861 || || ||| |||||||||| |||||||||||||| || ||||| | ||||||||||| Sbjct 10898089 ACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGG 10898148 Query 33862 TATTGGATTGGGAAAATAACAAA 33884 |||| ||| ||||| || || || Sbjct 10898149 TATTTGATGGGGAAGATGACGAA 10898171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622927211181720