Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq15 190 5e-43 seq11 86.0 2e-11 >seq15 Length=39264731 Score = 190 bits (210), Expect = 5e-43 Identities = 557/844 (66%), Gaps = 22/844 (3%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 |||||||| | | | ||| || |||||||| ||| | ||| | || ||| | || ||| Sbjct 17056201 ATCAATGGCAAAGTAGCTGAGCGTCCGCAGCACATGCTCATGAGGGTGGCTGTGGGAATC 17056142 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTAT 363547 || | ||||| | || || || || || || || || || || || | ||| | Sbjct 17056141 CACGGGACGGATATCGAAGCGGCCATCGAGACCTACAACCTGCTGTCAGAGAA-GTGG-T 17056084 Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607 |||| |||||| | || || | | |||||||||||| | || ||| |||| | Sbjct 17056083 TCACCCACGCCTCCCCGACCCTCTTCAATGCTGGAACCAACAGGCCGCAGCTGTCCAGCT 17056024 Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667 |||| || || |||||||| || ||| ||||| |||| |||||||| ||| ||| Sbjct 17056023 GCTTCCTGCTCGCCATGAAGGATGACAGCATTGAGGGGATCTACGACACACTGAAGCATT 17055964 Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCA 363726 | || || || ||||| || || || ||||| || | || | | | | || Sbjct 17055963 GCGCCCTCATCTCCAAATCAGCCGGAGGGATTGGCGTGGCAGTCAGCTGCATCAGATCCA 17055904 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | | || |||||| |||||| || | || || ||||| || || ||| | | Sbjct 17055903 CGGGG-AGCTACATTGCCGGCACCAACGGCTGTTCCAACGGGCTTGTCCCAATGTTGAGG 17055845 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGCGT 363844 |||| |||| || || |||| || || ||||| || | |||| | || || | Sbjct 17055844 GTGTACAACAACACAGCACGGTATGTTGATCAGGGGGGCAACAAAAGACCC--GGCGCCT 17055787 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 | || ||||| || ||||| || ||| | ||||| || || ||||| ||| | Sbjct 17055786 TCGCCATGTACCTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGA 17055727 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 |||||||||| ||||| ||| || | || |||||||| || || ||| | |||||| Sbjct 17055726 ACACGGGAAAGGAGGAGCAGCGAGCCAGGGACCTGTTCTACGCCCTGTGGATCCCTGACC 17055667 Query 363965 ATTTTATGAAGCGCGTGGAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGT 364023 || |||||||| |||||| || ||| | ||||| || | |||||| ||| || Sbjct 17055666 TCTTCATGAAGCGGGTGGAGAACAACGAAG-ACTGGTCCCTGATGTGCCCAGCCGACTGC 17055608 Query 364024 CCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTG--CTCTATACGAAAAGTATGAAT 364081 || || || || ||||| || || | || | ||||| || | | ||||| Sbjct 17055607 CCCGGACTGGATGAGTGCTGGGGGGAGGAGTTTGAAGAACTCTACACCAGA--TATGAGA 17055550 Query 364082 CGGAGGGAAAGG---CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGG 364138 |||||| | || ||| | | || ||| ||||||||| ||| ||||| | Sbjct 17055549 GGGAGGGGAGGGTGAAGCGTGTG---GTGAAGGCTCAGCAGCTATGGTATGCAATCATCG 17055493 Query 364139 ATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGT 364198 | ||||||| || || || || || || ||| | |||||||| | |||||| | ||| Sbjct 17055492 AGTCGCAGACAGAAACTGGGACGCCGTACATGGTCTACAAAGACGCCTGCAACAGGAAGA 17055433 Query 364199 CCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAAT 364258 |||||||||| | || || || || || |||||||| || || || || | || | Sbjct 17055432 GCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAACCTTTGCACGGAAATCGTCGAGT 17055373 Query 364259 ACAC 364262 |||| Sbjct 17055372 ACAC 17055369 Score = 86.0 bits (94), Expect = 2e-11 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || || |||||||||| | ||||||||||||||||| || ||| | |||| | | Sbjct 17053884 CCGGATGATCTGAAGCAGCTGTACAAAACCGTATGGGAGATCTCCCAGAAAACTGTACTC 17053825 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 | ||||| ||||| || || || | ||| ||||||||||| | ||| | ||| Sbjct 17053824 AAGATGGCCGCCGACCGTGGGGCCTACATCGACCAGAGCCAGTCCCTGAACATCCACATA 17053765 Query 365089 ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | |||| | || || |||||| || |||||| |||||||| ||||| Sbjct 17053764 GCAGAGCCGAACTACGGCAAGCTGACCAGCATGCACTTCTACGGCTGGAA 17053715 >seq11 Length=32426571 Score = 86.0 bits (94), Expect = 2e-11 Identities = 138/196 (70%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 364944 TTCTGTGCAGAACATTCCAGGATTTCC-AGAAGATCTGAAGCCTATTTACAAAACCGTAT 365002 |||| | ||||||||| | ||| ||| ||| |||||||||| | || ||||| || | Sbjct 23759530 TTCTTTTCAGAACATTG-ATGATATCCCAGATGATCTGAAGCAGCTGTATAAAACTGTGT 23759588 Query 365003 GGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTC 365062 ||||||| ||| | ||| || | | ||||| || ||||| || | | || | Sbjct 23759589 GGGAAATCTCCCAGAAGACTGTCCTCAAGATGGCAGCAGATCGTGGCACATACATTGACC 23759648 Query 365063 AGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGC 365122 ||||||||||| ||||| | ||| || |||||| || | || |||| ||||| Sbjct 23759649 AGAGCCAGTCGCTTAACATTCACATTGCTGAGCCAAACTATGGAAAACTTAGTAGCATGC 23759708 Query 365123 ATTTCTACGGGTGGAA 365138 ||||||| || ||||| Sbjct 23759709 ATTTCTATGGCTGGAA 23759724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303310733107394