Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15 428 6e-115 seq11 100 4e-16 seq21 87.8 2e-12 seq16 82.4 1e-10 >seq15 Length=39264731 Score = 428 bits (474), Expect = 6e-115 Identities = 1282/1974 (65%), Gaps = 21/1974 (1%) Strand=Plus/Plus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||| ||||||||| | || || | | ||||| ||||| |||||||| | || Sbjct 17054675 CTGGATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCCCT 17054734 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||| || | || | || || || || || || | ||||| || || || | || | Sbjct 17054735 CTCCGTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCG 17054794 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || || || || | || | ||||| || || |||| || || || Sbjct 17054795 GCGGGTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 17054854 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || |||| || | || || || | || | | | ||| Sbjct 17054855 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGAT 17054914 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62397 || || || || | | ||| | ||| || |||| || Sbjct 17054915 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGTA 17054974 Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457 || ||||| || ||||| | ||| ||| |||| || || || | ||| || | Sbjct 17054975 CTGAAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCTAGCTCGGC 17055034 Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 ||| || || || ||||| || || || | || || || || || ||||||| | || Sbjct 17055035 AGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTT 17055094 Query 62518 TAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 62577 || ||| || || |||| ||||| |||||| | ||| || || || || || || Sbjct 17055095 GAGCAGTTGAGCCTCGGGGCTTTCAAAGGGATAACGCATGAGGATGAAGGCATCAGCCAA 17055154 Query 62578 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62637 ||| || || || || || || || || || | | | || || | |||||| | Sbjct 17055155 TCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCAC 17055214 Query 62638 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATC 62697 || || || || || || |||| || || | || ||||||||||||||| ||| | Sbjct 17055215 CGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGTA 17055274 Query 62698 CTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATGCAACAGA 62754 |||||| ||| ||| | ||| || | || ||||||| | || | ||| Sbjct 17055275 TGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATAGA 17055334 Query 62755 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT-----ATCTCAGTG 62809 |||||||| || || || ||||| | | | | || |||| | || || ||| Sbjct 17055335 GGCCAGATTGCAGACCGCCACCTCGTC--CTTGC---TAGTGTACTCGACGATTTCCGTG 17055389 Query 62810 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 62869 ||||| || || ||||||||||| || | ||| || || || ||||| |||| || || Sbjct 17055390 CAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCG 17055449 Query 62870 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 62929 || || || | ||| | || || |||||||| |||| || || || || || | ||| Sbjct 17055450 TCTTTGTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCAT 17055509 Query 62930 A-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAA 62988 | | || ||||||| | | | || ||| || || || ||| || || | Sbjct 17055510 AGCTGCT-GAGCCTTCACCACACGCTTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAG 17055568 Query 62989 TCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAA 63048 | ||| ||||| || ||||| | |||||||| || || || | || ||||||| Sbjct 17055569 TTCTTCAAACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAG 17055628 Query 63049 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 ||||| ||| ||| | || ||| || ||||| ||||| ||||| ||||| || || Sbjct 17055629 GGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTA 17055688 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 || || || |||| || || ||||| ||||| || ||||| || || || ||||| | Sbjct 17055689 GAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTC 17055748 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | | |||| | ||||| || |||| ||| ||||| | | || || | |||||| || Sbjct 17055749 AAACACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCC 17055808 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 |||||||| | || | || ||||| || || || ||||||||||| | || || || Sbjct 17055809 CCCCTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTT 17055868 Query 63289 GGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAG 63348 ||| || ||||| || | || ||||| || ||| | || || | || | Sbjct 17055869 GGAACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGCTGACTGCCAC 17055928 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 || || || || || ||| ||||| | ||||| | || | || || ||||| || Sbjct 17055929 GCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCC 17055988 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 ||| || || |||||| ||||| || || || ||||| |||| || | | | || Sbjct 17055989 CTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGT 17056048 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 ||| ||||| || | ||| || || ||||| || ||||| || || || || || ||||| Sbjct 17056049 TCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTA 17056108 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 ||||| || || | || |||||| || ||||| || || || | ||| | ||| Sbjct 17056109 GGTCTCGATGGCCGCTTCGATATCCGTCCCGTGGATTCCCACAGCCACCCTCATGAGCAT 17056168 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 |||||| || | ||| | | ||| || || || | || |||||| |||| ||| Sbjct 17056169 GTGCTGCGGACGCTCAGCTACTTTGCCATTGATCTTTAGCAGGTAGGAGCGCTCCAGAGT 17056228 Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63708 || || ||||| |||| || || || |||| || || || || ||||||| || Sbjct 17056229 CTTGAAGCCAAAGAAGTTATAGGAGAAATCTCTGTCATAGATTATGGCCGAGTTAAGGCG 17056288 Query 63709 ATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCC 63768 || || | | ||| | || | || | |||| || || | || | Sbjct 17056289 GTCTTTGTTTGCAAGAACAATGTCGAGTGTGTCTTTCGAAACCATGGGGGA--GTGGCGT 17056346 Query 63769 ATTTTTA--GGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 63826 | || | || |||| |||||| | | |||||||| || || || || | || || Sbjct 17056347 TTGTTCAGGGGGTTGATGTAGTTGTACAGGTCCTCCATGACGTCGCTGAACACCTTCTTC 17056406 Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 || |||||||| || || || || || || | ||||| || |||||||| || || | Sbjct 17056407 GTCTCTTTGTGCAGGTTAGAGACAGCAATGCGTGCGGCGAGTATGGCATAGTCGGGGTAC 17056466 Query 63887 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACA 63946 | || || |||||| || || || || ||||| ||||| | || || || || || Sbjct 17056467 TTGGTTGTGAGAGTGGCAGCGATCTCCGCCGCCAGCGTGTCGAGCTCCACGGTGGTGACG 17056526 Query 63947 CCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTG 64006 || | || | || ||||| |||||||| | || | | || || | | || || Sbjct 17056527 CCGCTGTACAAACCCTGGATGACCTTCATCGTGATCTGAGCTGGGTCCACAAACTCCATG 17056586 Query 64007 TTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 64059 || | ||||| || || |||| || |||||||||||||| || |||||||| Sbjct 17056587 TTGAGTCCATAGCA-AAGCTTCTGGATGCGAGATGTGATTTTGTCGAACATGAC 17056639 >seq11 Length=32426571 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||| ||||| || | |||||||| || | |||||| ||||||||||| || Sbjct 23758247 ATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTACTCTTCCTG 23758188 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 || || || ||||| ||||| || |||| ||||||||||| |||| || || || || Sbjct 23758187 TTGCAGGCGTCCTTGTAAAGCATATATGGTGTACCAGTTTCTGTCTGCGACTCAATGATG 23758128 Query 62921 GCTTTCCA 62928 || | ||| Sbjct 23758127 GCATACCA 23758120 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || || || | ||||||||||||||||| ||||| || || || || | ||| Sbjct 23757120 GTGCCAGCGTTGAACAGTGTAGGAGAAGCGTGAGTGAACCACTTCTCTGACAGCAAGTTG 23757061 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 23757060 TAGGTCTCAATGGCTGCATCAATGTCACCTTTATGAATCCCGACTGACACTCTCATTAGC 23757001 Query 63587 ATGTGCTGAGGTC 63599 |||||||| |||| Sbjct 23757000 ATGTGCTGGGGTC 23756988 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 63793 TAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGC 63852 |||||| | |||| |||| |||| ||| || || |||||||| || || ||||| || Sbjct 23755154 TAAATCAGCACTCAC--CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGATACAGC 23755097 Query 63853 TATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTC 63912 || | || || || || ||||| || || |||| || || |||||| || | || Sbjct 23755096 GATGCGTGCAGCCAGGATTGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCAGCAGTCTC 23755037 Query 63913 GGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 |||||||||||||| | || || || || || ||| | || | || ||||| ||||| Sbjct 23755036 TGCTGCCAGAGTGTCAAGCTCCACTGTGGTGACTCCACTGTACAAACCCTGGATCACCTT 23754977 Query 63973 CAT 63975 ||| Sbjct 23754976 CAT 23754974 >seq21 Length=37011614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||| || ||||| | |||||||| | || || || ||||||||||| | ||| | Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| | || | |||||||| ||||| ||||| || ||||| || || ||||| | Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACAGCTGCAAAAG 18722733 Query 32803 C 32803 | Sbjct 18722732 C 18722732 >seq16 Length=36154882 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 33157 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 33216 |||| || ||| |||||||||| |||||||||||||| || ||||| | ||||||||||| Sbjct 10882391 CCACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCAT 10882332 Query 33217 GATATTGAATTGGAAAAATAACAAA 33241 | |||| || || || || || || Sbjct 10882331 GGTATTTGATGGGGAAGATGACGAA 10882307 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 33157 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 33216 |||| || ||| |||||||||| |||||||||||||| || ||||| | ||||||||||| Sbjct 10898087 CCACCTCCTCCGCTGTCCAAAAGGATGCCTCTGCCTTCTTGTACATCTGCCAGATGTCAT 10898146 Query 33217 GATATTGAATTGGAAAAATAACAAA 33241 | |||| || || || || || || Sbjct 10898147 GGTATTTGATGGGGAAGATGACGAA 10898171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633611668333200