Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1437 172 1e-37 seq16 87.8 3e-12 >seq1437 Length=1065406 Score = 172 bits (190), Expect = 1e-37 Identities = 169/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 749799 AGACGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 749858 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || ||||| || || || ||||| || |||||||||||| Sbjct 749859 CCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 749918 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || |||||||| |||||||||||| || || || |||| |||| Sbjct 749919 TTATCCTGGATTTTGGCCTTGACATTCTCGATGGTGTCACTTGGCTCAACCTCCAGGGTG 749978 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || |||||||| || || || |||||||| Sbjct 749979 ATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 750016 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 749344 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 749403 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||||||| Sbjct 749404 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCC 749463 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || |||||||| ||| |||||||| || || || |||| |||| Sbjct 749464 TTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTG 749523 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 749524 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 749561 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 777970 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 778029 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||| ||| Sbjct 778030 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 778089 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || ||||||||| ||| |||||||| || || || |||| |||| Sbjct 778090 TTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTG 778149 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| || || |||||||| Sbjct 778150 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 778187 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 778652 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 778711 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||| ||| Sbjct 778712 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 778771 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || ||||||||| ||| |||||||| || || || |||| |||| Sbjct 778772 TTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTG 778831 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 778832 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 778869 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 778880 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 778939 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||| ||| Sbjct 778940 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 778999 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || ||||||||| ||| |||||||| || || || |||| |||| Sbjct 779000 TTATCCTGGATTTTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTG 779059 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| || || |||||||| Sbjct 779060 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 779097 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 779108 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 779167 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || |||||||| || |||||||||||| Sbjct 779168 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCC 779227 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || || || |||||||| ||| |||||||| || || || |||| |||| Sbjct 779228 TTGTCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTG 779287 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || |||||||| || || || |||||||| Sbjct 779288 ATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 779325 Score = 165 bits (182), Expect = 2e-35 Identities = 168/218 (77%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 749572 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 749631 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||||||| Sbjct 749632 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCC 749690 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || |||||||| ||| |||||||| || || || |||| |||| Sbjct 749691 TTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTG 749750 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 749751 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 749788 Score = 165 bits (182), Expect = 2e-35 Identities = 168/218 (77%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || |||||||| || | Sbjct 778198 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 778257 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||| ||| Sbjct 778258 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 778317 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || ||||||||| ||| |||||||| || || || |||| |||| Sbjct 778318 TTATCCTGGAT-TTGGCCTTGACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTG 778376 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| || || |||||||| Sbjct 778377 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 778414 Score = 159 bits (176), Expect = 6e-34 Identities = 167/218 (77%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || ||||| || | Sbjct 778425 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGG 778484 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || || || || || ||||| || |||||||| ||| Sbjct 778485 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCCTCC 778543 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || || || |||||||| ||| |||||||| || || || |||| |||| Sbjct 778544 TTATCCTGGATTTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTG 778603 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 778604 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 778641 >seq16 Length=36154882 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 10884141 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 10884082 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| ||||||||||||||| |||||||| Sbjct 10884081 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 10884046 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| ||||| ||| |||||||||| ||| ||||| Sbjct 10896346 CATCACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTC 10896405 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 ||||| ||| ||||||||||||||| |||||||| Sbjct 10896406 CAGGGAGATGTTCTCCATGAAGTCAAAAGGGTTCTC 10896441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921592827441240