Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq15 522 5e-143 seq16 136 7e-27 seq11 96.9 7e-15 seq21 87.8 3e-12 >seq15 Length=39264731 Score = 522 bits (578), Expect = 5e-143 Identities = 1090/1602 (68%), Gaps = 60/1602 (4%) Strand=Plus/Plus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| |||| |||||| | ||| | || |||||||||||| | |||| Sbjct 17054682 GATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCATTCCACAGGCCC---CTCTCC 17054738 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || |||||| ||| || | ||||||||| ||||| ||||| ||||| Sbjct 17054739 GTCAGGTCTTTGAGCAGGTGGGGGTTGACGATCTGAAACTCCCCCGAGAGCACCCGGCGG 17054798 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| |||||| || | ||||||| ||| |||||||||| ||||| || ||| Sbjct 17054799 GTGTAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 17054858 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||| |||||||||||||| || | ||| Sbjct 17054859 GAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTC 17054918 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGC----CCCA 244302 | ||| ||||||||||||| ||||| ||| ||| | |||| Sbjct 17054919 TCCTTCAGCAGCTTCCAGTCCCACA---------GGTCC----GTTGGAGTCTTCTCCCA 17054965 Query 244303 CATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACC 244362 |||||| |||| || | ||||| || || || ||| || || ||| |||| || Sbjct 17054966 CATGTCGTACTGAAGAATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCC 17055025 Query 244363 GTCGCGCTGG-GCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGA 244421 | || | | ||||||| |||||| | || | ||||| |||||||| ||||| |||| Sbjct 17055026 -TAGCTCGGCAGCCAGCTCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGA 17055084 Query 244422 TC---ATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCC-CATCATCATG 244477 || || ||| || | | |||| | || | || ||||| | ||| | ||| Sbjct 17055085 TCTGGATGTTGAGCAGTT---GAGCCTCGGGGCTT-TCAAAGGGATAACGCATGAGGATG 17055140 Query 244478 AAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 ||| | || |||| |||||| || ||||| || || || ||||| ||| |||| || | | Sbjct 17055141 AAGGCATCAGCCAATCCCTGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTC 17055200 Query 244538 ATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATC 244597 ||||||| ||| ||||| ||||| |||||| |||||||| | ||| | | || Sbjct 17055201 CTGGCTTCTTCCACCGGGTAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATT 17055260 Query 244598 A-TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGT 244656 | | || | |||| ||||| | |||||| || || | ||| | | || Sbjct 17055261 ACTTTGGTC-ACGTATGCCAGTTTTTTAAAGTCATAA--GTCCG----CTCAGGGGTG-- 17055311 Query 244657 GATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGA 244716 || || |||||| |||| |||||| |||||||| |||||||| ||| Sbjct 17055312 -------ACGTACATGTTGAGAGCGATAGAGGCCAGATTGCAGACCGCCACCTCGTCCTT 17055364 Query 244717 GTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTG 244776 | | ||||||| ||| || || ||||| ||||| |||||||||||||||||||| | ||| Sbjct 17055365 GCTAGTGTACTCGACGATTTCCGTGCAAAGGTTGCTGCACTTGATGGTGCCCAGATTCTG 17055424 Query 244777 GTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAG 244836 || ||| ||| |||||||||||| ||||||| |||| | ||| ||| || || Sbjct 17055425 CTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGACCATGTACGGCGTCCCAGTTTCTGT 17055484 Query 244837 CTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCC 244896 ||| | ||| || | ||| || | | |||||| ||| | || | || Sbjct 17055485 CTGCGACTCGATGATTGCATACCATAGCTGCTGAGCCTTCACCACACGCTTCACCCTCCC 17055544 Query 244897 CTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCC 244956 ||| ||| || | |||||| || | || ||||| |||||| ||| || || || Sbjct 17055545 CTCCCTCTCATATCTGGTGTAGAGTTCTTCAAACTCCTCCCCCCAGCACTCATCCAGTCC 17055604 Query 244957 GGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAA 245016 |||||| || |||||||| || ||| || || || || |||| || |||||| Sbjct 17055605 GGGGCAGTCGGCTGGGCACATCAGGGACCAGTCTTCGTTGTTCTCCACCCGCTTCATGAA 17055664 Query 245017 GAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGT 245076 |||||| |||||||| ||||| | ||| |||||||||| | |||||| ||| || || Sbjct 17055665 GAGGTCAGGGATCCACAGGGCGTAGAACAGGTCCCTGGCTCGCTGCTCCTCCTTTCCCGT 17055724 Query 245077 GTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGC 245136 ||||||| ||||||||| |||||||| || || | |||||||||||||| ||| | || Sbjct 17055725 GTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAGGTACATGGC 17055784 Query 245137 GAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGC-GTTGAAGA 245195 || ||||||||| | |||||||| ||||| || || || | | | | |||| | | Sbjct 17055785 GAAGGCGCCGGGTCTTTTGTTGCCCCCCTGATCAAC-ATACCGTGCTGTGTTGTTGTACA 17055843 Query 245196 TGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT 245255 | || | || || | ||||| || |||||||||||| |||||| ||| Sbjct 17055844 CCCTCAACATTGGGACAAGCCCGTTGGAACAGCCGTTGGTGCCGGCAATGTAGCTCCCCG 17055903 Query 245256 TGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGC 245315 || |||| | ||||| | || ||| | || ||||| |||||||||||||||| Sbjct 17055904 TGGATCTGATGCAGCTGACTGCCACGCCAATCCCTCCGGCTGATTTGGAGATGAGGGCGC 17055963 Query 245316 AGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGC 245375 | ||| | ||||| || ||||| |||||||| ||||||| |||||| |||| Sbjct 17055964 AATGCTTCAGTGTGTCGTAGATCCCCTCAATGCTGTCATCCTTCATGGCGAGCAGGAAGC 17056023 Query 245376 AGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAA 245435 || ||||||||| ||| || | | | | ||||| || || ||| ||||||||| | Sbjct 17056024 AGCTGGACAGCTGCGGCCTGTTGGTTCCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGA 17056083 Query 245436 AGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT-TGTCGCCGTG 245493 | | | ||| || || | ||| |||| || || ||||| | ||| ||||| Sbjct 17056084 ACCA-CTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCCGCTTCGATATCCGTC-CCGTG 17056141 Query 245494 GATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTC-GAT-GGGTCCCTCGGGT 245551 ||| || || ||||||||| ||||||| || ||| | | | || | | Sbjct 17056142 GATTCCCACAGCCACCCTCATGAGCATGTGCTGCGGACGCTCAGCTACTTTGCCATTGAT 17056201 Query 245552 CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| |||| |||||||||||| || |||||||| |||||| Sbjct 17056202 --CTTTAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCAAAG 17056241 >seq16 Length=36154882 Score = 136 bits (150), Expect = 7e-27 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| ||||||| ||||| ||||||||||||||| | |||||| ||||||||| Sbjct 10883081 TGGTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCT 10883140 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 10883141 GGCTGAAGAAAAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 10883199 Query 42825 GACGAGG 42831 ||||||| Sbjct 10883200 GACGAGG 10883206 Score = 136 bits (150), Expect = 7e-27 Identities = 108/127 (85%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| ||||||| ||||| ||||||||||||||| | |||||| ||||||||| Sbjct 10897397 TGGTGGCCTTTGCCGCCGTGGAGGGGATCTTCTTCTCGGGCTCGTTCGCCGCCATCTTCT 10897338 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| | | ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 10897337 GGCTGAAGAAAAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 10897279 Query 42825 GACGAGG 42831 ||||||| Sbjct 10897278 GACGAGG 10897272 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 10884051 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 10884110 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 10884111 GGTGGGCGAGTACCAG 10884126 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| || ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 10896436 CCCTTTTGACTTCATGGAGAACATCTCCCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 10896377 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 10896376 GGTGGGCGAGTACCAG 10896361 >seq11 Length=32426571 Score = 96.9 bits (106), Expect = 7e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||| || ||||| |||||||| | ||| ||||||||||| | ||||||||| || Sbjct 23757783 CTTCATAAAAAGGTCTGGGATCCACAAGGCGAAGAAGAGGTCCCGCGCCCTCTGCTCTTC 23757724 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 || ||||||||| ||| ||||||||| || || || || | ||||| ||||| | Sbjct 23757723 TTTACCCGTGTTCTTCTTCAACTCCAAAAACTCGAACACATCAAAATGCCACGGCTCGAG 23757664 Query 245128 GTAGACAGCGAGGGCGCCGGGCCGCT 245153 ||| ||||| | || || |||| || Sbjct 23757663 GTACACAGCAAACGCCCCAGGCCTCT 23757638 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || ||||| | ||| ||||| ||||||| || | |||||| Sbjct 23759245 CACCTGAAACTCTCCTGAAAGCACCCTGCGGGTGTAGATGTTGCTGGTGTATGCCTCGAT 23759186 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| | |||||||| ||||| || ||| || || ||||| || | || ||||| Sbjct 23759185 GGACTCATTATTGCCCAGGATCTGGGCAGTGGAAGCTGTGGGCATTGGGGCCAAAAGCAG 23759126 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 || |||||||| || ||||| Sbjct 23759125 GCTATTCCTCACACCATGCCT 23759105 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| || ||||| ||||| || || ||| | |||||||| Sbjct 23758275 CACCTCATCTTTGCTTGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTGATGGT 23758216 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCAT 244815 |||||| | || ||||| ||| |||||||||||||||||| ||||| Sbjct 23758215 GCCCAGATTTTGCTGATTACTCTTCCTGTTGCAGGCGTCCTTGTAAAGCAT 23758165 >seq21 Length=37011614 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| || | || || ||| | || || || |||||||||||||| || | || || Sbjct 18722717 GGGGAGCGGATTGTGGCTTTTGCAGCTGTGGAAGGCATCTTCTTCTCTGGTTCATTTGCT 18722776 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | |||| |||||| ||| ||| || ||||| || || |||| ||| ||||| ||| Sbjct 18722777 GCTATCTACTGGCTGAAGAAGAGGGGCCTAATGCCTGGCCTTACCTACTCCAACGAGCTC 18722836 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||||||||||| Sbjct 18722837 ATTAGCAGGGACGAGG 18722852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944308898515920