Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 >seq10 Length=27519051 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || |||| || |||| ||| || || | || ||||||||||||||||| ||||| Sbjct 14138113 AGTCCTGTAATGTGTGCAATCATGTAGGTAAGAAGTGAATAGCTGGCAATGTTGAAAGGC 14138172 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || || || ||||| || | || | ||| ||||||||||| || ||||| ||||| Sbjct 14138173 ACCCCTAATCCCATATCAGCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 14138232 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATC 20398 ||||| || || || | ||| ||||| || ||||||||| Sbjct 14138233 ACATAGAACTGGCAGAGTGCGTGGCAGGGGGGCAGCGCCATC 14138274 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGC 20593 || ||||||||||||||||||||||| || |||||||| | || |||||| ||| | Sbjct 14138943 GCACCAAAGTGCCTCCACTGGAAACCATACACAGGTCCTAGGTCACCCTCCTCTCTATCA 14139002 Query 20594 GCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCT 20653 | | || | | ||||||| |||| || || || ||||| ||||| |||||| Sbjct 14139003 GTGAACCCAAGGTTGTCCAGGAAGTCCCGAGACCCGTTGGCATCCCAGATCTTCACTCCT 14139062 Query 20654 GTTCTTGAAAGCTCCCTGGA 20673 || ||| |||||| |||| Sbjct 14139063 TTTTCTGATAGCTCCTTGGA 14139082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441358637450280