Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq15 168 8e-37 seq21 82.4 9e-11 >seq15 Length=39264731 Score = 168 bits (186), Expect = 8e-37 Identities = 827/1296 (64%), Gaps = 24/1296 (2%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 17054802 TAGATGTTGCTTGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 17054861 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | | || | || || ||| Sbjct 17054862 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCATGTTTGGCGATCTTCTCC 17054921 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || || | |||||| | | | ||| | || |||||| || |||| || Sbjct 17054922 TTCAGCAGCTTCCAGTCCCACAGGTCCGTTGGAGTCTTCTCCCACATGTCGTACTGAAGA 17054981 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || || | | ||||| || ||| | ||||| || | ||| | | |||| Sbjct 17054982 ATGCCCTTACTCACCGGCGAGCCTTCATACGTCTCATAGGTGCCTAGCTCGGCAGCCAGC 17055041 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| ||||||| || | || || | || ||||||||||| || | || | || Sbjct 17055042 TCGCAGCTCGCTTCCAAAGCGGCATAGTAGATTGTCTCAAAGATCTGGATGTTGA--GCA 17055099 Query 114242 -TTG-GCCTCGTCGGAATCAAACGCGAGTCGGCACAAA-ATAAATACATCCGCGAGACCT 114298 ||| |||||| | ||||| | || ||| | || || |||| || | || Sbjct 17055100 GTTGAGCCTCGGGGCTTTCAAAGG-GATAACGCATGAGGATGAAGGCATCAGCCAATCCC 17055158 Query 114299 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 114358 ||||| |||| || || || | || | ||| || ||| | | || ||||| || Sbjct 17055159 TGGACCCCGATTCCTATCGGCCTGTGGCGCATGTTCGACCTCCTGGCTTCTTCCACCGGG 17055218 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 114418 || | || | ||||||||| | || | || || | || || || | | ||| Sbjct 17055219 TAGTAGTTGATGTCGATAACCTTGTTCAAGTTCCTGACAATTACTTTGGTCACGT-ATGC 17055277 Query 114419 -AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 || |||| | ||| || | || ||| |||| ||| | || ||||| || Sbjct 17055278 CAGTTTTTTAAAGTCATAAGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGATAGA 17055334 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 |||||||| || || | ||| ||||| ||||||||| | |||||||| || | Sbjct 17055335 GGCCAGATTGCAGACCGCCACCTCGTCCTTGCTAGTGTACTCGACGATTTCCGTGCAAAG 17055394 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || | ||| |||||||||| |||| || || ||| |||| || || || || Sbjct 17055395 GTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 17055454 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT- 114656 ||| | |||||| |||||||| || || || || |||| || || || | ||| | | Sbjct 17055455 GTAGACCATGTACGGCGTCCCAGTTTCTGTCTGCGACTCGATGATTGCATACCATAGCTG 17055514 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | | | || || || || | | ||||||| ||| || | |||||||| ||| Sbjct 17055515 CTGAGCCTTCACCACACGC-TTCACCCTCCCCTCCCTCTCATATCTGGTGTAGAGTTCTT 17055573 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 ||||||| || ||| | ||| || || || | ||||||| | || |||| Sbjct 17055574 CAAACTCCTCCCCCCAGCACTCATCCAGTCCGGGGCAGTCGGCTGGGCACATCAGGGACC 17055633 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 | | | | ||| || ||||||||||||||||| |||||||| || || |||| | Sbjct 17055634 AGTCTTCGTTGTTCTCCACCCGCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAACA 17055693 Query 114837 GATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 114895 | |||| || ||| || | | ||| || || || ||||| ||||| | Sbjct 17055694 GGTCCCTGGCTCGCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAGGAAGTCAAAC 17055752 Query 114896 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAGC 114951 | ||| |||||| || |||||||||| |||| | || ||| | | || | Sbjct 17055753 ACATCAAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGTCTTTTGTTGCCCC-C 17055811 Query 114952 CTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGA 115011 ||| | ||||||| |||||| || | || | | |||||| | | || | || Sbjct 17055812 CTGATCAACATACCGTGCTGTGTTGTTGTACACCCTCAACATTGGGACAAGCCCGTTGGA 17055871 Query 115012 TTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCATGGATGTGCATA 115069 ||| || || || ||| | ||| ||||| || | || || || Sbjct 17055872 ACAGCCGTTGGTGCCGGCAATGTAGCTCCCCGTGGATCTGATGCAGC-TGACTGC-CACG 17055929 Query 115070 CCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCG 115129 ||||| || || || | || ||||| | ||||| | | | || || |||||||||| Sbjct 17055930 CCAATCCCTCCGGCTGATTTGGAGATGAGGGCGCAATGCTTCAGTGTGTCGTAGATCCCC 17055989 Query 115130 TCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTA 115189 || || |||| |||| | |||| ||||||||||| |||| || ||||| || Sbjct 17055990 TCAATGCTGTCATCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGCGGCCTGTTGGTT 17056049 Query 115190 CCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 ||||| ||||||||||| || | |||||| ||||| Sbjct 17056050 CCAGCATTGAAGAGGGTCGGGGAGGCGTGGGTGAAC 17056085 >seq21 Length=37011614 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | ||||| || || ||| || || || ||||| || |||| ||||| Sbjct 18722852 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGGCCCCTCTTCT 18722793 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 ||| |||| | || ||| ||||||||| ||||||||||| || |||||| Sbjct 18722792 TCAGCCAGTAGATAGCAGCAAATGAACCAGAGAAGAAGATGCCTTCCACA 18722743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597334432416360