Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 2e-13 seq22 89.7 6e-13 seq11 89.7 6e-13 seq8 89.7 6e-13 seq15 87.8 2e-12 >seq9 Length=30802437 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4947710 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4947651 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 4947650 TACTAACGAGGAGTG 4947636 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4949579 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4949520 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4949519 TACTAACGAGGA 4949508 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4950359 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4950300 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4950299 TACTAACGAGGA 4950288 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4952996 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4952937 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4952936 TACTAACGAGGA 4952925 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4953776 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4953717 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 4953716 TACTAACGAGGA 4953705 >seq22 Length=44097196 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 30049479 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30049538 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 30049539 TACTAACGAGGA 30049550 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 30050594 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30050653 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 30050654 TACTAACGAGGA 30050665 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 30051717 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30051776 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 30051777 TACTAACGAGGA 30051788 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 30060739 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30060798 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 30060799 TACTAACGAGGA 30060810 >seq11 Length=32426571 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 16129990 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 16129931 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 16129930 TACTAACGAGGA 16129919 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 16130691 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 16130750 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 16130751 TACTAACGAGGA 16130762 Score = 82.4 bits (90), Expect = 8e-11 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| ||| ||||| || | | |||||||||| |||||||||| ||||||| || |||| Sbjct 2150773 AAAGATTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGC-TGACAGGTGGGGATAC 2150715 Query 57058 TCACCACTATACTACCGAGGATTGA 57082 |||||||||||||| | |||| ||| Sbjct 2150714 TCACCACTATACTAACAAGGAGTGA 2150690 >seq8 Length=62059223 Score = 89.7 bits (98), Expect = 6e-13 Identities = 71/84 (85%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| | ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 23026845 AAAAATTAGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 23026904 Query 57057 CTCACCACTATACTACCGAGGATT 57080 || |||||||||||| |||||||| Sbjct 23026905 CTAACCACTATACTAACGAGGATT 23026928 >seq15 Length=39264731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 21060596 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 21060537 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 21060536 ATACTAACGAGGA 21060524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543195369659280