Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oreochromis_20niloticus_20[refseq_20GCF_5F001858045.1_202016-11-21] 2,567 sequences; 1,009,856,516 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1437 118 1e-21 >seq1437 Length=1065406 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || |||||||| || | || |||||| | ||| Sbjct 749805 AGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 749864 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 749865 TCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 749924 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || |||| | || || || | || | |||| Sbjct 749925 TGGATTTTGGCCTTGACATTCTCGATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTC 749984 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || | ||||| || || || ||||| || Sbjct 749985 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 750019 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 749365 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 749424 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| ||||| || || || ||||| ||| Sbjct 749425 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTG 749484 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | || || || | || | ||||||||| || | || Sbjct 749485 ACATTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 749544 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 749545 TTCACGAAGATCTGCAT 749561 Score = 109 bits (120), Expect = 5e-19 Identities = 143/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 749593 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 749652 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| ||||| || || || ||||| ||| Sbjct 749653 GCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCCTTATCCTGGATTTTGGCCTTG 749711 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | || || || | || | ||||||||| || | || Sbjct 749712 ACATTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 749771 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 749772 TTCACGAAGATCTGCAT 749788 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 779129 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 779188 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||| ||||| || ||||| ||||| || || || ||||| ||| Sbjct 779189 GCAAAGATCAGCCTCTGTTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATTTTGGCCTTG 779248 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | | || || || | || | ||||||||| || | ||| Sbjct 779249 ACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTT 779308 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || ||||| || Sbjct 779309 TTCACAAAGATCTGCATGTT 779328 Score = 100 bits (110), Expect = 3e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 778446 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 778505 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || || || || || ||||| ||| Sbjct 778506 GCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 778564 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | | || || || | || | ||||||||| || | || Sbjct 778565 ACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 778624 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 778625 TTCACGAAGATCTGCAT 778641 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 777991 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 778050 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || || || || || ||||| ||| Sbjct 778051 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 778110 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| | || || || | || | ||||||||| || | || Sbjct 778111 ACGTTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 778170 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 778171 TTCACAAAGATCTGCAT 778187 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 778673 GTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 778732 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || || || || || ||||| ||| Sbjct 778733 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 778792 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | | || || || | || | ||||||||| || | || Sbjct 778793 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 778852 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 778853 TTCACGAAGATCTGCAT 778869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 778901 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 778960 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || || || || || ||||| ||| Sbjct 778961 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATTTTGGCCTTG 779020 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | | || || || | || | ||||||||| || | || Sbjct 779021 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 779080 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 779081 TTCACAAAGATCTGCAT 779097 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| | ||||| ||||||||||| Sbjct 778219 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 778278 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || || || || || | ||| ||| Sbjct 778279 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGA-TTTGGCCTTG 778337 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | | || || || | || | ||||||||| || | || Sbjct 778338 ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 778397 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 778398 TTCACAAAGATCTGCAT 778414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499628767647480